View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7738_high_10 (Length: 342)
Name: NF7738_high_10
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 41465466 - 41465155
Alignment:
| Q |
15 |
tgattaaattaagagaactgcat--gtgttatgtatatatgcatagagtcttctggtcataacaaaagcaacacaacaattccatttgttttatatatcc |
112 |
Q |
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| T |
41465466 |
tgattaaattaagagaactgcatatgtgttatggatatatgcatagagccttctggtcataacaaaagcaacacaacaattccatttgttttatatatcc |
41465367 |
T |
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| Q |
113 |
atatgttttggaattaataggaccaaatcaaactttgggcaagatcaatagaacctaatatttgaaagaatattcctcttnnnnnnntgacttacattaa |
212 |
Q |
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| T |
41465366 |
atatgttttggaattaataggaccaaatcaaactttgggcaagatcaatagaacctaatatttgaaagaatattcctcttaaaaaaatgacttacattaa |
41465267 |
T |
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| Q |
213 |
tacaagggggtaaataattaaaccaagtaaatgaatccctagcttataaaccaatactagccaacttatcaggacaaaaaacaccatcttctctaaagag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
41465266 |
tacaagggggtaaataattaaaccaagtaaatgaatccctagcttataaaccaatactagccaacttatcaggataaaaaacactatcttctctgaagag |
41465167 |
T |
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| Q |
313 |
acgtgaaattct |
324 |
Q |
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|||||||||||| |
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| T |
41465166 |
acgtgaaattct |
41465155 |
T |
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