View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7738_high_7 (Length: 367)
Name: NF7738_high_7
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 5493346 - 5493007
Alignment:
| Q |
20 |
agcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggctcatcttca |
119 |
Q |
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| T |
5493346 |
agcaatcggagaaacagttaacctcctccggtggaataggacattcaagaaaaccgaaattctcagcaccaccaccaccgccgaatttggttcatcttca |
5493247 |
T |
|
| Q |
120 |
atcaacaactaatacagtttcacacgtgtctaaaacttcacttaaccattctccgccaccacctccacctccaccacctccgccaccgctgatgacacga |
219 |
Q |
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| T |
5493246 |
atcaacaactaatacagtttcacacgtgtctaaaacttcacttaaccatcctccgccaccacctccacctccgccacctccgccaccgctgatgacacga |
5493147 |
T |
|
| Q |
220 |
aaatcagtatcgccgacaccggcggtgtctgcatctataagtagattaagtgaaggacctggttctgttggtagtgtaacaaaaggttcagaaccagttt |
319 |
Q |
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| T |
5493146 |
aaatcagtatcgccgacacaggcggtgtctgcatctataagtagattaagtgaaggacctggttctgttggtagtgtaacaaaaggttcagaaccagttt |
5493047 |
T |
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| Q |
320 |
cagatcacgttgatgagagtttgaatttgagatattcttc |
359 |
Q |
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| T |
5493046 |
cagatcacgttgatgagagtttgaatttgagatcttcttc |
5493007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 23171586 - 23171550
Alignment:
| Q |
170 |
ctccgccaccacctccacctccaccacctccgccacc |
206 |
Q |
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| T |
23171586 |
ctccgccaccacctccacctccacaccctccgccacc |
23171550 |
T |
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