View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7738_high_8 (Length: 366)

Name: NF7738_high_8
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7738_high_8
NF7738_high_8
[»] chr1 (4 HSPs)
chr1 (51-270)||(11819074-11819290)
chr1 (59-265)||(11805133-11805336)
chr1 (148-205)||(11827837-11827894)
chr1 (59-105)||(11820549-11820595)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 11819074 - 11819290
Alignment:
Q  51 ttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataatcgaatatatgatatatctatctagttcatttgcttattatatc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||||||||    
T  11819074 ttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatc---tatctatctagttcatttgcttattatatc 11819170  T
Q  151 tagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11819171 tagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg 11819270  T
Q  251 gttcaacattgattggcatt 270  Q
    |||||||||||||| |||||    
T  11819271 gttcaacattgattagcatt 11819290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 265
Target Start/End: Original strand, 11805133 - 11805336
Alignment:
Q  59 aaaatggcacacatccaaacccagtattgtatttccatctttgaataatcgaatatatgatatatctatctagttcatttgcttattatatctagtcttg 158  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||           |||||| |||||||||||||||||||| |||    
T  11805133 aaaatggcacacatccaaacccaatattctatttccatctttgaataattggatatat-----------ctagtttatttgcttattatatctagttttg 11805221  T
Q  159 gaagtgggacgttgaagagggacttcaataaatatatct--------agttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatg 250  Q
    |||||||| |||||||||||||||| |||| || ||  |        |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  11805222 gaagtgggtcgttgaagagggacttgaatatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatgggatg 11805321  T
Q  251 gttcaacattgattg 265  Q
    ||||| |||||||||    
T  11805322 gttcaccattgattg 11805336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 11827837 - 11827894
Alignment:
Q  148 atctagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11827837 atctagtcttggaagtgggacgttgaagagggacttcaataaatatatctagttgcat 11827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11820549 - 11820595
Alignment:
Q  59 aaaatggcacacatccaaacccagtattgtatttccatctttgaata 105  Q
    |||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  11820549 aaaatggcacacatccgaacccaaaattgtatatccatctttgaata 11820595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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