View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7738_low_1 (Length: 755)
Name: NF7738_low_1
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 76 - 740
Target Start/End: Complemental strand, 30652217 - 30651553
Alignment:
| Q |
76 |
cttaggttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
175 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30652217 |
cttatgttatttgtgttaataatattaggtgttgttaaggatggaaacgggacacaactcatactcgtaaacaactgcaaggaaagtgtatggccaggaa |
30652118 |
T |
|
| Q |
176 |
ttctcagcaatgaaggacacccttcaatcaaagatggtggatttcacctcccaagcggcgaagaacttgttctccaactccctaaccactgggcaggaag |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30652117 |
ttctcagcaatgaaggacacccttcaatcaaagatggcggatttcacctcccaagcggcgaagaacttgttctccaactccctaaccactgggcaggaag |
30652018 |
T |
|
| Q |
276 |
aatctggggaagacaaggctgtttctgccacgaaacaaccggaaaaggcacatgtcaaaccggagactgcggaggccaattgaaatgcaagggaattggt |
375 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30652017 |
aatctggggaagacaaggctgtttcttccacgaaacaaccggaaaaggcacatgtcaaaccggagactgcggaggccaattgaaatgcaagggaattggt |
30651918 |
T |
|
| Q |
376 |
ggtgttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctacattactatgatgttagtttagttgacggttttaaccttccaa |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30651917 |
ggtgttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctacattactatgatgttagtttagttgacggttttaaccttccaa |
30651818 |
T |
|
| Q |
476 |
tgtcgatgaaacctattggtggcggtgttggttgtggaattgcttcttgtcaagctgatttgaatggttgttgtccatctcaacttgttgtgaagcataa |
575 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30651817 |
tgtcgatgaaacctattggtgggggtgttggttgtggcattgctacttgtcaagctgatttgaatggttgttgtccatctcaacttgttgtgaagcataa |
30651718 |
T |
|
| Q |
576 |
tgggaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcattggtgaatttgctgatccgaaaatttgcaagccaact |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30651717 |
tgggaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcactggtgaatttgctgatccgaaaatttgcaagccaact |
30651618 |
T |
|
| Q |
676 |
atgtttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgatgcaac |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30651617 |
atgtttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgatgcaac |
30651553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 30652330 - 30652265
Alignment:
| Q |
14 |
ataacagtttgaaaaacataagtgatttaataagattgtttttgaattaggcatcgtttcatctta |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30652330 |
ataacagtttgaaaaacataagtgatttaataagattgtttttgaatcaggcatcgtttcatctta |
30652265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 379 - 735
Target Start/End: Complemental strand, 22787447 - 22787091
Alignment:
| Q |
379 |
gttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctacattactatgatgttagtttagttgacggttttaaccttccaatgt |
478 |
Q |
| |
|
||||| ||||| ||| | |||||||||||||| ||| | ||| |||||| ||||||| ||||||||| ||||||||||| ||||| || | || | | |
|
|
| T |
22787447 |
gttccaccagcaacagtagttgaaatgacactaggatcatcatcttcaccactacatttctatgatgtgagtttagttgatggtttcaatttacctgttt |
22787348 |
T |
|
| Q |
479 |
cgatgaaacctattggtggcggtgttggttgtggaattgcttcttgtcaagctgatttgaatggttgttgtccatctcaacttgttgtgaagcataatgg |
578 |
Q |
| |
|
| ||||||||| ||||||| || ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||| ||||| |||||| ||||| |
|
|
| T |
22787347 |
caatgaaacctgttggtggtggaattggttgtggaatagcttcttgtgaagttgatttgaatgtttgttgtccatcagcacttgaagtgaagagaaatgg |
22787248 |
T |
|
| Q |
579 |
gaaagttgtggggtgtaaaagtgcttgtttggctacaaaatcagataagtattgttgcattggtgaatttgctgatccgaaaatttgcaagccaactatg |
678 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||| | ||| |||||||||| ||| || | | ||||||| |||| ||| || || || | |
|
|
| T |
22787247 |
gaaagttgttggttgtaaaagtgcttgtttggctatgcaatctgctaaatattgttgcactggagattattctgatcctaaaacttgtaaacctacactt |
22787148 |
T |
|
| Q |
679 |
tttgctcgtgtttttaagagtgtttgtcctcatgcttatagctatgcttatgatgat |
735 |
Q |
| |
|
|||||| | | |||||| | |||| ||| | |||||||| ||||||||||||||| |
|
|
| T |
22787147 |
tttgctaatctctttaaggctatttgccctaaagcttatagttatgcttatgatgat |
22787091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University