View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7738_low_12 (Length: 342)

Name: NF7738_low_12
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7738_low_12
NF7738_low_12
[»] chr3 (18 HSPs)
chr3 (110-327)||(52651024-52651241)
chr3 (15-112)||(52651891-52651988)
chr3 (7-112)||(31683028-31683133)
chr3 (7-112)||(31895299-31895404)
chr3 (7-112)||(31899883-31899988)
chr3 (7-112)||(31915592-31915697)
chr3 (7-112)||(31949240-31949345)
chr3 (47-112)||(16062150-16062215)
chr3 (47-111)||(16058006-16058070)
chr3 (47-111)||(16040124-16040188)
chr3 (47-112)||(16036044-16036109)
chr3 (47-112)||(16046628-16046693)
chr3 (109-143)||(31682336-31682370)
chr3 (109-143)||(31896062-31896096)
chr3 (109-143)||(31900646-31900680)
chr3 (109-143)||(31916355-31916389)
chr3 (109-143)||(31950003-31950037)
chr3 (110-140)||(52651245-52651275)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 110 - 327
Target Start/End: Complemental strand, 52651241 - 52651024
Alignment:
Q  110 caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651241 caactttgcagattaatattcgcttcactttttattcccacctcaatttaatgttaaacggacttcagtctcttagatgtccaaagcatgtgattgtaga 52651142  T
Q  210 ttacagtttggacatgactcatgtactacacaggaaagaggagcgttgaggaggattggtttggttaagcaagtagatggattgtgctatacaaataact 309  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651141 ttacagtttggacatgactcatgtactacacaaaaaagaggagcgttgaggaggattggtttggttaagcaagtagatggattgtgctatacaaataact 52651042  T
Q  310 tgagttctcctaaatgat 327  Q
    ||||||||||||||||||    
T  52651041 tgagttctcctaaatgat 52651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 52651988 - 52651891
Alignment:
Q  15 tacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52651988 tacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 52651891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 31683133 - 31683028
Alignment:
Q  7 tttggtgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcata 106  Q
    |||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31683133 tttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcata 31683034  T
Q  107 caccaa 112  Q
    ||||||    
T  31683033 caccaa 31683028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31895299 - 31895404
Alignment:
Q  7 tttggtgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcata 106  Q
    |||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31895299 tttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcata 31895398  T
Q  107 caccaa 112  Q
    ||||||    
T  31895399 caccaa 31895404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31899883 - 31899988
Alignment:
Q  7 tttggtgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcata 106  Q
    |||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31899883 tttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcata 31899982  T
Q  107 caccaa 112  Q
    ||||||    
T  31899983 caccaa 31899988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31915592 - 31915697
Alignment:
Q  7 tttggtgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcata 106  Q
    |||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31915592 tttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcata 31915691  T
Q  107 caccaa 112  Q
    ||||||    
T  31915692 caccaa 31915697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 31949240 - 31949345
Alignment:
Q  7 tttggtgttacaggggtgtataagggtgattttgctttggagtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcata 106  Q
    |||| ||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31949240 tttgatgttacaggggtgcataagggtgattttccattggaatgttttgaaataagagattgccctggattgacgtctttcccagatgaaggatttcata 31949339  T
Q  107 caccaa 112  Q
    ||||||    
T  31949340 caccaa 31949345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 16062215 - 16062150
Alignment:
Q  47 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 112  Q
    |||||||| |||  ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  16062215 agtgttttgaaactagagattgtcctggattgacgtctttcacacatgaaggatttcatacaccaa 16062150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 16058070 - 16058006
Alignment:
Q  47 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacacca 111  Q
    |||||||| |||| ||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  16058070 agtgttttgaaattagagattgtcctggattggtgtctttcacacatgaaggatttcatacacca 16058006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 16040188 - 16040124
Alignment:
Q  47 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacacca 111  Q
    |||||||| |||  ||||||||||||||||||  ||||||| || ||||||||||||||||||||    
T  16040188 agtgttttgaaactagagattgtcctggattggtgtctttcacacatgaaggatttcatacacca 16040124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 16036109 - 16036044
Alignment:
Q  47 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 112  Q
    |||||||| |||  |||||||||||| |||||  ||||||| || |||||||||||||||||||||    
T  16036109 agtgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaa 16036044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 16046693 - 16046628
Alignment:
Q  47 agtgttttcaaataagagattgtcctggattgacgtctttcccagatgaaggatttcatacaccaa 112  Q
    |||||||| |||  |||||||||||| |||||  ||||||| || |||||||||||||||||||||    
T  16046693 agtgttttgaaactagagattgtcctagattggtgtctttcacacatgaaggatttcatacaccaa 16046628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 31682370 - 31682336
Alignment:
Q  109 ccaactttgcagattaatattcgcttcacttttta 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  31682370 ccaactttgcagattaatattcgtttcacttttta 31682336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 31896062 - 31896096
Alignment:
Q  109 ccaactttgcagattaatattcgcttcacttttta 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  31896062 ccaactttgcagattaatattcgtttcacttttta 31896096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 31900646 - 31900680
Alignment:
Q  109 ccaactttgcagattaatattcgcttcacttttta 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  31900646 ccaactttgcagattaatattcgtttcacttttta 31900680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 31916355 - 31916389
Alignment:
Q  109 ccaactttgcagattaatattcgcttcacttttta 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  31916355 ccaactttgcagattaatattcgtttcacttttta 31916389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 31950003 - 31950037
Alignment:
Q  109 ccaactttgcagattaatattcgcttcacttttta 143  Q
    ||||||||||||||||||||||| |||||||||||    
T  31950003 ccaactttgcagattaatattcgtttcacttttta 31950037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 140
Target Start/End: Complemental strand, 52651275 - 52651245
Alignment:
Q  110 caactttgcagattaatattcgcttcacttt 140  Q
    |||||||||||||||||||||||||||||||    
T  52651275 caactttgcagattaatattcgcttcacttt 52651245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University