View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7738_low_16 (Length: 254)
Name: NF7738_low_16
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41465500 - 41465741
Alignment:
| Q |
1 |
agctcattttcatgctataggacatgtttgttgctggaagtgatacatcattagctattatagaatgggctatttcagaaatgctgaaaaacccaacaac |
100 |
Q |
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| T |
41465500 |
agctcattttcatgctataggacatgtttgttgctggaagtgatacatcattagcgattatagaatgggctatttcagaaatgctgaaaaacccaacaac |
41465599 |
T |
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| Q |
101 |
aatgatcaaagcccaacaagaagtaagagaacattttggcagcaaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatc |
200 |
Q |
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| T |
41465600 |
aatgatcaaagcccaacaagaagtaagagaacattttggcagcaaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatc |
41465699 |
T |
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| Q |
201 |
aaagaaacactaagattgcaccctcctttccctcttcttctc |
242 |
Q |
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| T |
41465700 |
aaagaaacactaagattgcaccctcctttccctcttcttctc |
41465741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 41654367 - 41654535
Alignment:
| Q |
59 |
tatagaatgggctatttcagaaatgctgaaaaacccaacaacaatgatcaaagcccaacaagaagtaagagaacattttggcagcaaaggatacattgat |
158 |
Q |
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| T |
41654367 |
tatacaatgggctttctcagaaatgctgaaaaaccctagagtaatgaaaaaggctcaagaagaagttagacaagcttttggtagcagaggatatgttgat |
41654466 |
T |
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| Q |
159 |
gaaacatctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccctcct |
227 |
Q |
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| T |
41654467 |
gaaaaagatcttcaagaactgaaatatctaaaagcagttattaaagaaacattaagagtgcatcctcct |
41654535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 41646837 - 41646997
Alignment:
| Q |
64 |
aatgggctatttcagaaatgctgaaaaacccaacaacaatgatcaaagcccaacaagaagtaagagaacattttggcagcaaaggatacattgatgaaac |
163 |
Q |
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| T |
41646837 |
aatgggctttctcagaaatgctgaaaaaccctagagtaatgaaaaaggctcaagaagaagttagacaagcttttggtagcagaggatatgttgatgaaaa |
41646936 |
T |
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| Q |
164 |
atctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccct |
224 |
Q |
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| T |
41646937 |
agatcttcaaaaactgaaatttctaaaagcagttattaaagaaaccttaagattgcaccct |
41646997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 12438610 - 12438519
Alignment:
| Q |
136 |
ttggcagcaaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccctcct |
227 |
Q |
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| T |
12438610 |
ttggaagcaagggatatgttgatgaaataaatcttcaagaactaaaatatttaaaagcagtgattaaagaaaccttaagattgcaccctcct |
12438519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 2433383 - 2433463
Alignment:
| Q |
143 |
caaaggatacattgatgaaacatctcttcaaggactgaaatatttgaaagcagtcatcaaagaaacactaagattgcaccc |
223 |
Q |
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| T |
2433383 |
caaaggatatattgatgaaataaattttcaagaactgaaatatgtaaaagcaataattaaagaaaccttaagattgcaccc |
2433463 |
T |
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