View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7738_low_2 (Length: 665)

Name: NF7738_low_2
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7738_low_2
NF7738_low_2
[»] chr3 (7 HSPs)
chr3 (1-650)||(36957687-36958332)
chr3 (338-398)||(46103786-46103846)
chr3 (1-34)||(10955866-10955899)
chr3 (1-33)||(456293-456325)
chr3 (1-33)||(458670-458702)
chr3 (1-33)||(10958163-10958195)
chr3 (350-398)||(42913304-42913352)
[»] chr1 (1 HSPs)
chr1 (350-434)||(7827735-7827815)
[»] chr5 (1 HSPs)
chr5 (1-36)||(10587220-10587255)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-33)||(14231-14263)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-33)||(41325-41357)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-33)||(69133-69165)
[»] chr8 (2 HSPs)
chr8 (2-34)||(3005485-3005517)
chr8 (1-33)||(4424480-4424512)
[»] chr7 (2 HSPs)
chr7 (1-33)||(2935684-2935716)
chr7 (339-398)||(24912064-24912124)
[»] chr6 (3 HSPs)
chr6 (1-33)||(28241163-28241195)
chr6 (1-33)||(33309297-33309329)
chr6 (1-33)||(33311566-33311598)
[»] chr4 (3 HSPs)
chr4 (1-33)||(2484715-2484747)
chr4 (2-34)||(5198864-5198896)
chr4 (1-33)||(9176315-9176347)
[»] chr2 (2 HSPs)
chr2 (1-33)||(19504178-19504210)
chr2 (1-33)||(42453858-42453890)


Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Original strand, 36957687 - 36958332
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaacatatggtattatgggtttgtccaacattttacatgcaaagacccaagccatgttgagaggaatcactt 100  Q
    ||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36957687 gttattgatatgattttcatcgaattcagaacatatggtattatgggtttgtccaacattttacatgcaaagacccaagccatgttgaaaggaatcactt 36957786  T
Q  101 tctcttgggaattgggatgcaggcttcatgaaaatcatgtgctttcccattcatgtcgatcaattagtggctaaggaaacttcgaggtttcattggtatg 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36957787 tctcttgggaattgggatgcag-cttcatgaaaatcatgtgctttccctttcatgtcgatcaattagtggctaaggaaacttcgaggtttcattggtatg 36957885  T
Q  201 ctaacctcttggaacctatttgaagttacctgactaaggaacaagatatctctatccaccacatctttatagaaggaaatttttgtaaggatatttttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36957886 ctaacctcttggaacctatttgaagttacctgactaaggaacaagatatctctatccaccacatctttatagaaggaaatttttgtaaggaaatttttta 36957985  T
Q  301 caagaacggatccaggataattttctgtgtgactacaataataatgtcaaaaacaaattgctcaataatattaaagactatactatttcattcaaaatga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  36957986 caagaacggatccaggataattttctgtgtgactacaataataatgtcaaaaacaaattgctcaataatattaa-----atactatttcattcaaaatga 36958080  T
Q  401 ctgacaattttaatatttttatttggcaaattttgttagtccatgtttattgaccgtcacaattgctaatt-gggatagaataagccgtcaacacttctt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |    
T  36958081 ctgacaattttaatatttttatttggcaaattttgttagtccatgtttattgaccgtcacaattgctaattggggatagaataagccgtcaagacttcat 36958180  T
Q  500 ttgttttaggtattcttcatatgtnnnnnnntttggggagaattttggtgtggctatgacaacacctaaccatgaattgcatctgcccttgatggtacac 599  Q
    || |||||||||||||||||||||       ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  36958181 tttttttaggtattcttcatatgtaaaaaattttggggagaattttagtgtggctatgaccacacctaaccatgaattgcatctgcccttgatggtacat 36958280  T
Q  600 gagtcattacc-tcgtctttcttcaacgttgttggctgatgcaataggatgt 650  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36958281 gagtcattaccttcgtctttcttcaacgttgttggctgatgcaataggatgt 36958332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 46103846 - 46103786
Alignment:
Q  338 ataataatgtcaaaaacaaattgctcaataatattaaagactatactatttcattcaaaat 398  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||    
T  46103846 ataataatgtcaaaaacaaatttctcaatgaaattaaagactatactatttcatttaaaat 46103786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10955899 - 10955866
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaacat 34  Q
    |||||||||||||||||| |||||||||||||||    
T  10955899 gttattggtgtgattttcatcgaattcacaacat 10955866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 456293 - 456325
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  456293 gttattggtgtgattttcatcgaattcacaaca 456325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 458670 - 458702
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  458670 gttattggtgtgattttcatcgaattcacaaca 458702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10958195 - 10958163
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  10958195 gttattggtgtgattttcatcgaattcacaaca 10958163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 42913304 - 42913352
Alignment:
Q  350 aaaacaaattgctcaataatattaaagactatactatttcattcaaaat 398  Q
    |||| |||||||||||| | |||||| |||| |||||||||||||||||    
T  42913304 aaaaaaaattgctcaatgaaattaaaaactaaactatttcattcaaaat 42913352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 7827815 - 7827735
Alignment:
Q  350 aaaacaaattgctcaa-taatattaaagactatactatttcattcaaaatgactgacaattttaatatttttatttggcaaatttt 434  Q
    ||||||| |||||||| |||| ||||||||||||| |||||||| ||||||||    |||||||||| |||||||||| |||||||    
T  7827815 aaaacaatttgctcaaataat-ttaaagactatacaatttcatttaaaatgac----aattttaataattttatttgggaaatttt 7827735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10587220 - 10587255
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaacatat 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  10587220 gttattggtgtgattttcatcgaattcacaacatat 10587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14263 - 14231
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  14263 gttattggtgtgattttcatcgaattcacaaca 14231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41357 - 41325
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  41357 gttattggtgtgattttcatcgaattcacaaca 41325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 69165 - 69133
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  69165 gttattggtgtgattttcatcgaattcacaaca 69133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3005517 - 3005485
Alignment:
Q  2 ttattggtgtgattttcgtcgaattcacaacat 34  Q
    ||||||||||||||||| |||||||||||||||    
T  3005517 ttattggtgtgattttcatcgaattcacaacat 3005485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4424480 - 4424512
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4424480 gttattggtgtgattttcatcgaattcacaaca 4424512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2935684 - 2935716
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2935684 gttattggtgtgattttcatcgaattcacaaca 2935716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 24912064 - 24912124
Alignment:
Q  339 taataatgtcaaaaacaaatt-gctcaataatattaaagactatactatttcattcaaaat 398  Q
    |||||||||||||||  |||| ||||||| | |||||| |||||||||||||| |||||||    
T  24912064 taataatgtcaaaaattaatttgctcaatgaaattaaaaactatactatttcaatcaaaat 24912124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28241195 - 28241163
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  28241195 gttattggtgtgattttcatcgaattcacaaca 28241163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33309297 - 33309329
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33309297 gttattggtgtgattttcatcgaattcacaaca 33309329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33311566 - 33311598
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33311566 gttattggtgtgattttcatcgaattcacaaca 33311598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2484747 - 2484715
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2484747 gttattggtgtgattttcatcgaattcacaaca 2484715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 5198864 - 5198896
Alignment:
Q  2 ttattggtgtgattttcgtcgaattcacaacat 34  Q
    ||||||||||||||||| |||||||||||||||    
T  5198864 ttattggtgtgattttcatcgaattcacaacat 5198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9176347 - 9176315
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    ||||||||||||||||||||||||||| |||||    
T  9176347 gttattggtgtgattttcgtcgaattcgcaaca 9176315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19504210 - 19504178
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  19504210 gttattggtgtgattttcatcgaattcacaaca 19504178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42453858 - 42453890
Alignment:
Q  1 gttattggtgtgattttcgtcgaattcacaaca 33  Q
    |||||||||||||||||| ||||||||||||||    
T  42453858 gttattggtgtgattttcatcgaattcacaaca 42453890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University