View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7738_low_20 (Length: 215)
Name: NF7738_low_20
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 2950294 - 2950433
Alignment:
| Q |
14 |
caagaaatactctatttatgcaaatgaattaatggtattgacattgaattcattcaagcaagttacatgtttatacttaaaaaattacccaggtactaaa |
113 |
Q |
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| T |
2950294 |
caagaaatactctatttatgcaaatgaattaatggtattgacattgaattgattcaagcaagttacatgtttatacttaaaaaattacccaggtactaaa |
2950393 |
T |
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| Q |
114 |
acatcattgaatattggtaaaaagaaatatatcattcaat |
153 |
Q |
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| T |
2950394 |
acatcattgaatattggtaaaaagaaatatatcattcaat |
2950433 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 2950423 - 2950460
Alignment:
| Q |
164 |
tatcattcaatgaattaagcaaccacattaacacaggt |
201 |
Q |
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| T |
2950423 |
tatcattcaatgaattaagcaaccacattaacacaggt |
2950460 |
T |
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