View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7738_low_4 (Length: 505)
Name: NF7738_low_4
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 51103461 - 51103947
Alignment:
| Q |
1 |
taaaaatatcatcaacagcaacataacaaatctaagctaccaaacccaaaactagaaaaacttcaaaagggtcccacccaccccacatggataaaacaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51103461 |
taaaaacatcatcaacagcaacataacaaatctaagctaccaaacccaaaactagaaaaacttcaaaagggtcccacccaccccacatggataaaacaaa |
51103560 |
T |
|
| Q |
101 |
gaaacagatcccaattagtaaaagcttgtaactttacctgaacaggaacagcataaaacctgacgctattgagaaaaattgtgggcctatcatggaaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51103561 |
taaacagatcccaattagtaaaagcttgtaactttacctgaacaggaacagcataaaacctgacgctattgagaaaaattgtgggcctatcatggaaaag |
51103660 |
T |
|
| Q |
201 |
cgaatgaggatttggcatcacagtagggcaagttttaggggtggaatttgagagagaagcatgaggaagatgagtgtagcatcttcgaaattggaagcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51103661 |
cgaatgaggatttggcatcacagtagggcaagttttaggggtggaatttgatagagaagcatgagaaagatgagtgtagcatcttcgaaattggaagcat |
51103760 |
T |
|
| Q |
301 |
gcagctttgagcttagaatttccaattctatgccaaaacgccataacctcaacgaatcaaacaacggttgaattaaccgtaactgaggttaattagtgtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51103761 |
gcagctttgagcttagaatttccaattctatgccaaaacgccataacctcaacgaatcaaacaacggttgaattaaccgtaactgaggttaattagtgtt |
51103860 |
T |
|
| Q |
401 |
tgtgnnnnnnnggcacacagaaattgaagacaaccttaaactgttcttctattggttgtgttttgatttgggcttcactgatcattg |
487 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51103861 |
tgtgtttttttggcacacagaaattgaagacaaccttaaactgttcttctattggttgtgttttgatttgggcttcactgatcattg |
51103947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 390
Target Start/End: Original strand, 51109263 - 51109291
Alignment:
| Q |
362 |
caacggttgaattaaccgtaactgaggtt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
51109263 |
caacggttgaattaaccgtaactgaggtt |
51109291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University