View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7738_low_5 (Length: 419)
Name: NF7738_low_5
Description: NF7738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7738_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 5696079 - 5695851
Alignment:
| Q |
8 |
tgagatgaagaacaaatcaatctcaaagatagtaaacttatataatgatataatgtagaaggcatgaaattttgtcattcaatatgcagttaagttttct |
107 |
Q |
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| T |
5696079 |
tgagataaagaacaaaccaatctcaaagataataaacttatataatgatataaggtag---gtatgaaatttta------aatattcagttaagttttct |
5695989 |
T |
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| Q |
108 |
tccaacttttatgcacgaaattcatatcaattgtggtgaaaattttcctttactcaaccaagagggttcatattgaaattttttg-cttttaacttcagc |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
5695988 |
tccaacttttatgcacgaaaatcatatcaattgtggtgaaaattttcttttactcaaccaagagggttcatattgaaatattttgccttttaacttcaga |
5695889 |
T |
|
| Q |
207 |
tcttgttgctaaatctgttcatttaatgaaatgcaatg |
244 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
5695888 |
tctggttgctaaatctgttcatttaatgaaatgcaatg |
5695851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 5794560 - 5794396
Alignment:
| Q |
8 |
tgagatgaagaacaaatcaatctcaaagatagtaaacttatataatgatataatgtagaaggcatgaaattttgtcattcaatatgcagttaagttttct |
107 |
Q |
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| T |
5794560 |
tgagataaagaacaaatctatctcaaagatagttaacttatataaggt-----------aggtatgaaattttgtcattcaatatgcagttaggttttct |
5794472 |
T |
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| Q |
108 |
tccaacttttatgcacgaaattcatatcaattgtggtgaaaattttcctttactcaaccaagagggttcatattga |
183 |
Q |
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| T |
5794471 |
tccaacttttatgcacgaaaatcatatcaattgtggtgaaaattttcctcctctcaagcatgagggttcatattga |
5794396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 318
Target Start/End: Complemental strand, 5794318 - 5794236
Alignment:
| Q |
236 |
aatgcaatgcaatgaatgataaacagatattagacttgcctaagaagaggaatatacagattcacctaatattaaactccaaa |
318 |
Q |
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|||| |||||||||||||||||| ||| |||||| |||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
5794318 |
aatgaaatgcaatgaatgataaagtaataccagactttcctaagaagaggaatatataaattcacctaatagtaaactccaaa |
5794236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 5794199 - 5794133
Alignment:
| Q |
340 |
gaacaaatttgaatgaataattaattcctttttcgattgtcagatgaaaggataataaaaacaaatt |
406 |
Q |
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| T |
5794199 |
gaacaaatctaaatgaacaattaattcatttctcggttgtcagatgaaaggataagaaaaataaatt |
5794133 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 9419101 - 9419246
Alignment:
| Q |
8 |
tgagatgaagaacaaatcaatctcaaagatagtaaacttatataatgatataatgtagaaggcatgaaattttgtcattcaatatgcagttaagttttct |
107 |
Q |
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|||||| || |||||||| ||||||||||||||||| |||||||| ||||||| |||| || ||| |||||| | ||||| |||| |||||| |||||| |
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| T |
9419101 |
tgagataaaaaacaaatccatctcaaagatagtaaaattatataaggatataagatagacggtatggaattttattattcactatgtagttaatttttct |
9419200 |
T |
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| Q |
108 |
tccaacttttatgcacgaaattcatatcaattgtggtgaaaatttt |
153 |
Q |
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||||| |||||||||| ||| ||||||||| |||||||| |||||| |
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| T |
9419201 |
tccaaattttatgcacaaaaatcatatcaaatgtggtgagaatttt |
9419246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 9430244 - 9430335
Alignment:
| Q |
8 |
tgagatgaagaacaaatcaatctcaaagatagtaaacttatataatgatataatgtagaaggcatgaaattttgtcattcaatatgcagtta |
99 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||| ||| |||||||||||||| |||| ||||| |
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| T |
9430244 |
tgagataaagaacaaatccatctcaaagatagtaaaattatataaggatataaggtagaaggtatggaattttgtcattcactatgtagtta |
9430335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 9410349 - 9410405
Alignment:
| Q |
262 |
atattagacttgcc-taagaagaggaatatacagattcacctaatattaaactccaa |
317 |
Q |
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|||||||||||||| || |||||||||||||| |||||||||| |||||||||||| |
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| T |
9410349 |
atattagacttgccctataaagaggaatatacaaattcacctaacattaaactccaa |
9410405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 241 - 319
Target Start/End: Original strand, 7112499 - 7112577
Alignment:
| Q |
241 |
aatgcaatgaatgataaacagatattagacttgcctaagaagaggaatatacagattcacctaatattaaactccaaat |
319 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
7112499 |
aatgcaatgaatgataaagaaattttagaattgtctaagaagaggaatatacaaattaacctaatattaaactccaaat |
7112577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 7112614 - 7112679
Alignment:
| Q |
341 |
aacaaatttgaatgaataattaattcctttttcgattgtcagatgaaaggataataaaaacaaatt |
406 |
Q |
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||||||| |||||||| || ||||| |||| || |||||||||||| |||||| ||||||||||| |
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| T |
7112614 |
aacaaatctgaatgaacaactaatttctttctcagttgtcagatgaagggataagaaaaacaaatt |
7112679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 41484693 - 41484771
Alignment:
| Q |
240 |
caatgcaatgaatgataaacagatattagacttgcctaagaagaggaatatacagattcacctaatattaaactccaaa |
318 |
Q |
| |
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||||||||||||||| | | | |||||||||||||| ||||| | | ||||||| |||||||||||||||||||||||| |
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| T |
41484693 |
caatgcaatgaatgaaagagaaatattagacttgcccaagaacaaggatatacaaattcacctaatattaaactccaaa |
41484771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 9976133 - 9976091
Alignment:
| Q |
276 |
taagaagaggaatatacagattcacctaatattaaactccaaa |
318 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
9976133 |
taagaagatgaatatacaaattcacctaatattaaactccaaa |
9976091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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