View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_10 (Length: 619)
Name: NF7739_high_10
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_10 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 32687639 - 32688238
Alignment:
| Q |
1 |
taaaaataattctcttttatcccattaacacgttaattctggaaataaatactaacttttttactaataactctataaaaattctcttgtatcccataaa |
100 |
Q |
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| T |
32687639 |
taaaaataattctcttttatcccattaacacgttaaatctggaaataaatactaacttttttactaataactctataaaaattcttttgtatcccataaa |
32687738 |
T |
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| Q |
101 |
cgctaacnnnnnnnaacaacgctcatgaaagctaacgtacaacaataatgactcaggtccactctttgacaaaataaggggtagaaatgaaaatgatata |
200 |
Q |
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| T |
32687739 |
cgctaactttttttaacaacgctcatgaaagctaacgtacaacaataatgactcaggtccactctttgacaaaataaggggtagaaatgaaaatgatata |
32687838 |
T |
|
| Q |
201 |
atatttgtttcaataacatttgatgaaaatgataaagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagagtatggatagttttag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32687839 |
atatttgtttcaataacatttgatgaaaatgataaagaaaataaaacaggaaggaaaagaaatcatcctgagcctaagaaaagagtatggataggtttag |
32687938 |
T |
|
| Q |
301 |
ttcaattttagtgtagaaaaacaaattgaaatttgaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttattttgattccaaagtt |
400 |
Q |
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||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32687939 |
ttcaatttttgtgt----aaaaaaattgaaatttgaagagctctctttttggttgaatgctcaaatactggtgcgtaagccttattttgattccaaaatt |
32688034 |
T |
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| Q |
401 |
aaacttaaatcttaaatnnnnnnnnnnnntgcacatcagatatcactcactgtattactggcagaaaaatccacggtaacgcttagatt----nnnnnnn |
496 |
Q |
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| T |
32688035 |
aaacttaaatcttaaat-gaaaaaaaaaatgcacatcagatatcactcactgtattactggcagaaaaatccacagtaacgcttagattaaaaaaaaaaa |
32688133 |
T |
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| Q |
497 |
ntcacatgcagtattacgatgttataacaaaatagttacggccaatgtatttgctcataaccctcnnnnnnnaccacaacctcctaatgtcttacgtgag |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
32688134 |
atcacatgcagtattacgatgttataacaaaatagttacgaccaatgtatttgctcataaccctcttcttttaccacaacctcctaatgtcttacttgag |
32688233 |
T |
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Back To:
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Target: scaffold0028 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 37638 - 37700
Alignment:
| Q |
187 |
atgaaaatgatataatatttgtttcaataacatttgatgaaaatgataaagaaaataaaacag |
249 |
Q |
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||||||| |||||||| ||||||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
37638 |
atgaaaacgatataatttttgtttcaataacatttgctgaaaattatgaagaaaataaaacag |
37700 |
T |
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