View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_13 (Length: 566)
Name: NF7739_high_13
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 50966754 - 50966311
Alignment:
| Q |
10 |
aataatattcaatatggtatcacttttaatttttattgttggtattatgaataa-tggtttatatacccacttctgaaattcttttaaggattaaaatgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966754 |
aataatattcaatatggtatcacttttaatttttattgttggtattatgaataaatggtttatatacccacttctgaaattcttttaaggattaaaatgt |
50966655 |
T |
|
| Q |
109 |
agcctaacccgattgagtacccgttaaacnnnnnnngtatttaattcgttttgttaaaagaaatcaaatttcgtagtggtagaagagtttacgaggagac |
208 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966654 |
agcctaacccgattgagtacccgttata----ttttgtatttaattcgttttgttaaaagaaatcaaatttcgtagtggtagaagagtttacgaggagac |
50966559 |
T |
|
| Q |
209 |
cgaaagggtataatagtttacgatggagaactgaatagcttctctcttctattatatgaatgtcaaaactggaatctatctttccatgtccgtttatatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50966558 |
cgaaagggtataatagtttacgatggagaactgaatagcttctctcttctattatatgaatgtcaaaactggaatctatctt-ccatgtccgtttatatg |
50966460 |
T |
|
| Q |
309 |
tggtttagtgtataaaatggagaatgttagtagaatttcgtttttatgtttaaaatgatatatgtgcacacacataggtacaaggaagtggcagcatgac |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966459 |
tggtttagtgtataaaatggagaatgtgagtagaatttcgtttttatgtttaaaatgatatatgtgcacacacataggtacaaggaagtggcagcatgac |
50966360 |
T |
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| Q |
409 |
cctgacccatgtggcccgtatatgaaatgaaaccaatgtaattaaagaa |
457 |
Q |
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| T |
50966359 |
cctgacccatgtggcccgtatatgaaatgaaaccaatgtaattaaagaa |
50966311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 51069889 - 51069446
Alignment:
| Q |
10 |
aataatattcaatatggtatcacttttaatttttattgttggtattatgaataa-tggtttatatacccacttctgaaattcttttaaggattaaaatgt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069889 |
aataatattcaatatggtatcacttttaatttttattgttggtattatgaataaatggtttatatacccacttctgaaattcttttaaggattaaaatgt |
51069790 |
T |
|
| Q |
109 |
agcctaacccgattgagtacccgttaaacnnnnnnngtatttaattcgttttgttaaaagaaatcaaatttcgtagtggtagaagagtttacgaggagac |
208 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069789 |
agcctaacccgattgagtacccgttata----ttttgtatttaattcgttttgttaaaagaaatcaaatttcgtagtggtagaagagtttacgaggagac |
51069694 |
T |
|
| Q |
209 |
cgaaagggtataatagtttacgatggagaactgaatagcttctctcttctattatatgaatgtcaaaactggaatctatctttccatgtccgtttatatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51069693 |
cgaaagggtataatagtttacgatggagaactgaatagcttctctcttctattatatgaatgtcaaaactggaatctatctt-ccatgtccgtttatatg |
51069595 |
T |
|
| Q |
309 |
tggtttagtgtataaaatggagaatgttagtagaatttcgtttttatgtttaaaatgatatatgtgcacacacataggtacaaggaagtggcagcatgac |
408 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069594 |
tggtttagtgtataaaatggagaatgtgagtagaatttcgtttttatgtttaaaatgatatatgtgcacacacataggtacaaggaagtggcagcatgac |
51069495 |
T |
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| Q |
409 |
cctgacccatgtggcccgtatatgaaatgaaaccaatgtaattaaagaa |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069494 |
cctgacccatgtggcccgtatatgaaatgaaaccaatgtaattaaagaa |
51069446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 50966130 - 50966033
Alignment:
| Q |
450 |
ttaaagaaagctgtacaaaattttcacacttgtccaaaacctccacacctaccccacgtaccatcatattatacccaaataaaacgacccatccatat |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50966130 |
ttaaagaaagctgtacaaaattttcacacttgtccaaaacctccacacctaccccacgtaccatcatattatacccaaataaaacgacccatccatat |
50966033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 51069265 - 51069168
Alignment:
| Q |
450 |
ttaaagaaagctgtacaaaattttcacacttgtccaaaacctccacacctaccccacgtaccatcatattatacccaaataaaacgacccatccatat |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51069265 |
ttaaagaaagctgtacaaaattttcacacttgtccaaaacctccacacctaccccacgtaccatcatattatacccaaataaaacgacccatccatat |
51069168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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