View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_14 (Length: 535)
Name: NF7739_high_14
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 43576010 - 43575486
Alignment:
| Q |
1 |
ccccatataacctgagtcttggattgaggaagagttattaccaaagaaaattatgttcataggtacctctttttcgtgcaaaagtcctgtcataatatct |
100 |
Q |
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| T |
43576010 |
ccccatataacctgagtcttggattgaggaagagttattaccaaagaaaattatgttcataggtacctctttttcgtgcaaaagtcctgtcataatatct |
43575911 |
T |
|
| Q |
101 |
aaccttaatgatatatatgaaaaatatattttctaattattatagtatctaattcatctttttcatatttgaaaagtatgccatggtagagttatcacac |
200 |
Q |
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| T |
43575910 |
aaccttaatgatatatatgaaaaatatattttctaattattatagtatctaattcatctttttcatatttgaaaagtatgccatggtagagttatcacac |
43575811 |
T |
|
| Q |
201 |
aaaatagaaaaaattacaagcaattgctaattatatatgcacacacattctacgtgtgtttgtgtgtatagtacatatctaccttgacatgaataagtta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43575810 |
aaaatagaaaaaattacaagcaattgctaattatatatgcacacacattctacgtgtgtttgtatgtatagtacatatctaccttgacatgaataagtta |
43575711 |
T |
|
| Q |
301 |
ggttcaaagtaacgttttaagatggtatacccaaaatgaattaagatacaagcatttgatattatcaacaaaatgtataagtagttaacttaccagtcaa |
400 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43575710 |
ggttcaaagtaacgttttaagaaggtatacccaaaatgaattaagatacaagcatttgatattatcaacaaaatgtataattagttaacttaccagtcaa |
43575611 |
T |
|
| Q |
401 |
attatcaaactaccattcttctacgatttcagcagcctaatttattatcagatttccagctctcatatttgtcatcgctaatgcatcattgtaatcactt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43575610 |
attatcaaactaccattcttctacgatttcagcagcctaatttattatcagatttcaagctctcatatttgtcatcgctaatgcatcatattaatcactt |
43575511 |
T |
|
| Q |
501 |
ttcaatctttgaaaagccttctctg |
525 |
Q |
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|||||||||||||||||||| |||| |
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| T |
43575510 |
ttcaatctttgaaaagccttttctg |
43575486 |
T |
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