View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_20 (Length: 486)
Name: NF7739_high_20
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 44476818 - 44476363
Alignment:
| Q |
13 |
attctaaggtcccaccacaaacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgactatgg |
112 |
Q |
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| T |
44476818 |
attctaaggtcccaccacaaacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgactatgg |
44476719 |
T |
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| Q |
113 |
tcgtttctctatccgaaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaacaatt |
212 |
Q |
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| T |
44476718 |
tcgtttctccatccgaaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaacaatt |
44476619 |
T |
|
| Q |
213 |
tcagctcttaaagattgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccattt |
312 |
Q |
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| T |
44476618 |
tcagctcttaaagattgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcccattt |
44476519 |
T |
|
| Q |
313 |
ctcaaggcgaagaattacaaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggtttagttactgcatcttctgatcaaacggtgat |
412 |
Q |
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| T |
44476518 |
ctcaaggcgaagaattacaaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggtttagttactgcatcttctgatcaaacggtgat |
44476419 |
T |
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| Q |
413 |
taatgatttttcatcaacaatttccgatgatacaaagattcatagtgtgtcccttg |
468 |
Q |
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| T |
44476418 |
taatgatttttcatcaacaatttccgatgatacaaagattcatagtgtgtcccttg |
44476363 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 37166677 - 37166625
Alignment:
| Q |
330 |
caaaccttgcttagtgctgttttaacaaaccaacaaacttgtttagatggttt |
382 |
Q |
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| T |
37166677 |
caaacattgcttagtgctgttttaactaatcatcaaacatgtttagatggttt |
37166625 |
T |
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