View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_high_24 (Length: 452)
Name: NF7739_high_24
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 35900664 - 35900351
Alignment:
| Q |
12 |
gagacaaaatatttgatagtgatgcaatataaaacaagcaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctct |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35900664 |
gagacaaaatatttgatagtgaagcaatataaaacaagatactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctct |
35900565 |
T |
|
| Q |
112 |
gaaatattcaggaatagacaagcctaagaaaaaggcaaaaatgatagccctacagaagctgnnnnnnntataacaattatcataagaacatacatactaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35900564 |
gaaatattcaggaatagacaagcctaagaaaagggcaaaaatgatagccctacagaagctgaaaaaaatataacaattatcataagaacatacatactaa |
35900465 |
T |
|
| Q |
212 |
ggaccatgccgtttgaatttcctttttcattaggaattatcttgtaaattttttaacatgtcctacagctagtttagttttttctttaaacaaacacaca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35900464 |
ggaccatgccgtttgaatttcctttttcattaggaattatcttgtaaattttttaacatgtcctacaactagtttagttttttctttaaacaaacacaca |
35900365 |
T |
|
| Q |
312 |
caaatgttggcatc |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35900364 |
caaatgttggcatc |
35900351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 35897754 - 35897645
Alignment:
| Q |
40 |
ataaaacaagcaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaag |
139 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35897754 |
ataaaacaagaaactcacccatccagctttggtatgagcaggaccatgaagggccctgatagtgtattctctgaaatattcaggaatagacaagcctaag |
35897655 |
T |
|
| Q |
140 |
aaaaaggcaa |
149 |
Q |
| |
|
|||| ||||| |
|
|
| T |
35897654 |
aaaagggcaa |
35897645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 35903772 - 35903674
Alignment:
| Q |
51 |
aactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaagaaaaaggcaa |
149 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
35903772 |
aactcacccatccagctttggtatgagcagggccatgaagggccctaatagtgtactctctgaaatgttcaggaatagacaagcctaagaaaagggcaa |
35903674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 35897599 - 35897537
Alignment:
| Q |
146 |
gcaaaaatgatagccctacagaagctgnnnnnnntataacaattatcataagaacatacatac |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||| |
|
|
| T |
35897599 |
gcaaaaatgatagccctacagaagctgaaaaaaatataacaattaacattagaccatacatac |
35897537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 5044523 - 5044420
Alignment:
| Q |
40 |
ataaaacaagcaactcactcatccagctttggtatgagcaggaccatgaatggccttgatagtgtattctctgaaatattcaggaatagacaagcctaag |
139 |
Q |
| |
|
||||||||| ||||||| |||| ||| || ||||||||||| ||||||| ||||||| |||| ||||||||||||| ||||||||||| || || ||| |
|
|
| T |
5044523 |
ataaaacaacaaactcacccatctagcctttgtatgagcagggccatgaagggccttggaagtgaattctctgaaatactcaggaatagataatcccaag |
5044424 |
T |
|
| Q |
140 |
aaaa |
143 |
Q |
| |
|
|||| |
|
|
| T |
5044423 |
aaaa |
5044420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University