View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_26 (Length: 446)
Name: NF7739_high_26
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 56164388 - 56164283
Alignment:
| Q |
4 |
tgatagcaattacaaaattaagatcaaagcaatttgtcgtagcacaatgtcactgatgaactggggtttcgatgcaattatatattcatgtgatcaatca |
103 |
Q |
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| T |
56164388 |
tgatagcaattacaaaattaagatcaaagcaatttctcgtcatacaacgtcacggatgaaaaggg-tttcgatgcaattatatattcatgtgatcaatca |
56164290 |
T |
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| Q |
104 |
ataattt |
110 |
Q |
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| T |
56164289 |
ataattt |
56164283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 49445799 - 49445886
Alignment:
| Q |
304 |
ttactttggcttctcgggatcaagttactgctagcagcccatcaaacagtttggtaaagtgtcctgtacaagatgataaacgtaacag |
391 |
Q |
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| T |
49445799 |
ttactttggcttctcgtgatcaattgactgctagcagcacattaaacattttggcaaggtgtcctgtacaagatgatgaacttaacag |
49445886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 55709717 - 55709789
Alignment:
| Q |
304 |
ttactttggcttctcgggatcaagttactgctagcagcccatcaaacagtttggtaaagtgtcctgtacaaga |
376 |
Q |
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| T |
55709717 |
ttactctggcttctcgggatcaattgactgccagcagcacattaaacattttggcaaggtgtcctgtacaaga |
55709789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 428
Target Start/End: Original strand, 49445919 - 49445958
Alignment:
| Q |
389 |
cagaactcatatctcattgtctagctacaatgctcatgat |
428 |
Q |
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| T |
49445919 |
cagaactcatatctcattgtctagctacactgctcatgat |
49445958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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