View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_28 (Length: 430)
Name: NF7739_high_28
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 19087502 - 19087856
Alignment:
| Q |
60 |
taatcatcaaactaagtaaattcgtaataagttcaaagtcagcaaacagctcggttagtgaactgagaaacatcaaagaaatattatccagtagggttag |
159 |
Q |
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| T |
19087502 |
taatcatcaaactaagtaaattcgtaataagttcaaagttagcagacagctcggctggtgaactgagaaacatcaaagaaatattatccagtagggttag |
19087601 |
T |
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| Q |
160 |
ggttcgaatcctggatacaaacataacctaatagaatttgtctatagtaatgttatgaaatttaatgtacttacttgggagattccatggttctacacca |
259 |
Q |
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| T |
19087602 |
ggttcgaatcctggatacaaacataacctaatagaatttgtctatagtaatgttatgaaatttaatgtacttacttgggagattccatggttctacacca |
19087701 |
T |
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| Q |
260 |
ttgatatcaatgactggaataaccctatctatagcatttgttactccttgtagtttattatttagataaaagctaacaagctcttcttcagttgggaaga |
359 |
Q |
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| T |
19087702 |
ttgatatcaatgactggaataaccctatctatagcatttgttactccttgtagtttattatttagataaaagctaacaagctcttcttcagttgggaaga |
19087801 |
T |
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| Q |
360 |
aacgaaaaccaggtggaaagatatcttccattgaattaattgaattctacttgat |
414 |
Q |
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| T |
19087802 |
aacgaaaaccaggtggaaagatatcttccattgaattaattgaattctacttgat |
19087856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 36452189 - 36452136
Alignment:
| Q |
322 |
tagataaaagctaacaagctcttcttcagttgggaagaaacgaaaaccaggtgg |
375 |
Q |
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| T |
36452189 |
tagatagaagccaactagctcttcttctgttgggtagaaacgaaaaccaggtgg |
36452136 |
T |
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