View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_29 (Length: 427)
Name: NF7739_high_29
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_29 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 5993 - 6401
Alignment:
| Q |
1 |
tatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttcttttaccac |
100 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5993 |
tatcaatatgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttcttttaccac |
6092 |
T |
|
| Q |
101 |
tgaatgattctgcagaaccatgttcaggaacaattagtaatttagttattattcgtgtcgtgtttgatctccatgatagcaggttcggagcaagaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093 |
tgaatgattctgcagaaccatgttcaggaacaattagtaatttagttattattcgtgtcgtgtttgatctccatgatagcaggttcggagcaagaatttt |
6192 |
T |
|
| Q |
201 |
ataggacagggcaaagatcagaatataatatgaacatataataaaaaacataaaacaattgctgaatatatttattggcaaaaggataagaggatcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6193 |
ataggacagggcaaagatcagaatataatatgaacatataataaaaaacataaaacaattgctgaatatatttattggcaaaaggataagaggatcagaa |
6292 |
T |
|
| Q |
301 |
ggcgtaggcttacattaggatcattatccatttctataaacactgcttgcatcattccatatatttcagagttgctagctttcttccctatgctttcctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6293 |
ggcgtaggcttacattaggatcattatccatttctataaacactgcttgcatcattccatatatttcagagttgctagctttcttccctatgctttcctt |
6392 |
T |
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| Q |
401 |
ggcactttt |
409 |
Q |
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| T |
6393 |
ggcactttt |
6401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 5993 - 6401
Alignment:
| Q |
1 |
tatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttcttttaccac |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5993 |
tatcaatgtgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaaaatctttcaaatcctctagttcttttaccac |
6092 |
T |
|
| Q |
101 |
tgaatgattctgcagaaccatgttcaggaacaattagtaatttagttattattcgtgtcgtgtttgatctccatgatagcaggttcggagcaagaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6093 |
tgaatgattctgcagaaccatgttcaggaacaattagtaatttagttattagtcgtgtcgtgtttgatctccatgatagcaggttcggagcaagaatttt |
6192 |
T |
|
| Q |
201 |
ataggacagggcaaagatcagaatataatatgaacatataataaaaaacataaaacaattgctgaatatatttattggcaaaaggataagaggatcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6193 |
ataggacagggcaaagatcagaatataatatgaacatataataaaaaacataaaacaattgctgaatatatttattggcaaaaggataagaggatcagaa |
6292 |
T |
|
| Q |
301 |
ggcgtaggcttacattaggatcattatccatttctataaacactgcttgcatcattccatatatttcagagttgctagctttcttccctatgctttcctt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6293 |
ggcgtaggcttacattaggatcattatccatttctataaacactgcttgcatcattccatatatttcagagttgctagctttcttccctatgctttcctt |
6392 |
T |
|
| Q |
401 |
ggcactttt |
409 |
Q |
| |
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||||||||| |
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|
| T |
6393 |
ggcactttt |
6401 |
T |
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