View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_high_33 (Length: 426)
Name: NF7739_high_33
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_33 |
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| [»] scaffold0839 (2 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 416
Target Start/End: Complemental strand, 24512098 - 24511698
Alignment:
| Q |
31 |
cttgatgattataatcttggtaacaaatttgaactatgcggtaacacagtaaaaaatatgtttctaaatagcggtgagattacacttaataatgacaaca |
130 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||| || || |
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| T |
24512098 |
cttgatgattataatcttggtaacatatttgaactatgcggtaacacagtaaaaa-tatatttctaaatagaggtgattttacatttaataatatca-ca |
24512001 |
T |
|
| Q |
131 |
tttggaaaattgaggaacttagtgttgatctgcaattgaagaataacaacacatttaacatatgtttctaaatag-------gttacattgactaataac |
223 |
Q |
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| T |
24512000 |
gtaggaaaattgaggaaattagtgttgatctgcaattgaagaataacaacacatttaacatttgtttctacatagcagtgatgttacattgactaataac |
24511901 |
T |
|
| Q |
224 |
acaataaaaatatacgctacattaatgacatattttaaactgaagaacattcaaacagataaaatacgtttct-aaatagcttcaatgttacatcttaga |
322 |
Q |
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| | ||||||||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||||| ||||| |||||||| | ||||||||||||||| |
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| T |
24511900 |
atagtaaaaatatacgctacagtaatgaca-attttaaattgaagaacagtcaaacagttaaaatatatttctaaaatagctacgatgttacatcttaga |
24511802 |
T |
|
| Q |
323 |
atagcaatgtaaaaatatcgtct----------taaattcacctcgaagaataagacagttaaaatataaacgaaaataggcgttattatacctcaaaga |
412 |
Q |
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| T |
24511801 |
atagcaatgtaaaaatatcatcttaaaatagcataaatttacctcgaagaataagacagttaaaatataaacgaaaatagcagttattatacctcaaaga |
24511702 |
T |
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| Q |
413 |
ataa |
416 |
Q |
| |
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|||| |
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| T |
24511701 |
ataa |
24511698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 24125215 - 24125172
Alignment:
| Q |
294 |
tctaaatagcttcaatgttacatcttagaatagcaatgtaaaaa |
337 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
24125215 |
tctaaagagcttcgatgttacatcttagaatagcaatgtaaaaa |
24125172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0839
Description:
Target: scaffold0839; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 472 - 777
Alignment:
| Q |
20 |
tttatgataagcttgatgattataatcttggtaacaaatttgaactatgcggtaacacagtaaaaaatatgtttctaaa-tagcggtgagattacactta |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||| ||||| ||| ||||| |
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| T |
472 |
tttatgataagcttgatgat-ataatcttggtaacatatttgaactctgcggtaacacagtaaaaa-tatgtttctaaaatagaggtgattttatactta |
569 |
T |
|
| Q |
119 |
ataatgaca--acatttggaaaattgaggaacttagtgttgatctgcaattgaagaataacaacacatttaacatatgtttctaaatag-------gtta |
209 |
Q |
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||||| | | ||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
570 |
ataataatatcacaataggaaaattgaggaactcagtgttgatctgcaattgaagaataacaacacatttaacatatgtttctaaatagcaatgatgtta |
669 |
T |
|
| Q |
210 |
cattgactaataacacaataaaaatatacgctacattaatgacatattttaaactgaagaacattcaaacagataaaatacgtttct-aaatagcttcaa |
308 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||||| |||||||| ||||||| ||||| |||||||| | | |
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| T |
670 |
cattgactaataacacagtaaaaatatacgttacattaatgacagattttaaattgaagaacagtcaaacagttaaaatatatttctaaaatagctacta |
769 |
T |
|
| Q |
309 |
tgttacat |
316 |
Q |
| |
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|||||||| |
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| T |
770 |
tgttacat |
777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 2957 - 3069
Alignment:
| Q |
311 |
ttacatcttagaatagcaatgtaaaaatatcgtcttaaa----------ttcacctcgaagaataagacagttaaaatataaacgaaaataggcgttatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||| || |
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| T |
2957 |
ttacatcttagaatagcaatgtaaaaatatcgtcttaaaatagcataaatttacctcgaagaataagaaagttaaaatataaacgaaaatagcggttttt |
3056 |
T |
|
| Q |
401 |
atacctcaaagaa |
413 |
Q |
| |
|
||||||||||||| |
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|
| T |
3057 |
atacctcaaagaa |
3069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 8027029 - 8027210
Alignment:
| Q |
19 |
ctttatgataagcttgatgattataatcttggtaacaaatttgaactatgcggtaacacagtaaaaaatatgtttctaaatagcggtgagattacactta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
8027029 |
ctttatgataagcttgatgattataatcttggtaacatatttgaactatacggtaacacagt-aaaaatatgtttctaaatagcggtgattttacactta |
8027127 |
T |
|
| Q |
119 |
ataatgacaacatttggaaaattgaggaacttagtgttgatctgcaattgaagaataacaacacatttaacatatgtttctaaa |
202 |
Q |
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||||| || || | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
8027128 |
ataataac-acggtcggaaaattgaggaacttggtgttgatctgcaagtgaagaataacaacacatttaacatatggttctaaa |
8027210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 67990 - 68149
Alignment:
| Q |
16 |
cacctttatgataagcttgatgattataatcttggtaacaaatttgaactatgcggtaacacagtaaaaaatatgtttctaaatagcggtgagattacac |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
67990 |
cacctttatgataagcttgatgattataatcttgataacagatttgaactatacggtaacagtg---aaaatatgtttctaaatagcggtgaacttacac |
68086 |
T |
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| Q |
116 |
ttaataatgacaacatttggaaaattgaggaacttagtgttgatctgcaattgaagaataacaa |
179 |
Q |
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|||||||| || ||| | ||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
68087 |
ttaataataac-acagtcggaaaattgaggaacctagtgttgatatgcaattgaagaataacaa |
68149 |
T |
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