View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_high_4 (Length: 772)

Name: NF7739_high_4
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_high_4
NF7739_high_4
[»] chr3 (10 HSPs)
chr3 (156-643)||(31423810-31424290)
chr3 (316-532)||(24712244-24712462)
chr3 (1-71)||(31423655-31423725)
chr3 (534-635)||(24712584-24712684)
chr3 (586-673)||(30127259-30127347)
chr3 (576-645)||(24099352-24099421)
chr3 (599-673)||(19295863-19295936)
chr3 (615-644)||(5556596-5556625)
chr3 (600-657)||(17550968-17551025)
chr3 (600-657)||(19176513-19176570)
[»] chr1 (10 HSPs)
chr1 (615-757)||(30655586-30655729)
chr1 (587-650)||(15840932-15840995)
chr1 (600-644)||(38544764-38544808)
chr1 (600-644)||(46603403-46603447)
chr1 (563-642)||(24658903-24658982)
chr1 (615-673)||(2660838-2660895)
chr1 (618-652)||(32876644-32876678)
chr1 (600-657)||(19598647-19598704)
chr1 (600-657)||(31585773-31585830)
chr1 (600-657)||(41920463-41920520)
[»] chr8 (9 HSPs)
chr8 (260-490)||(31503540-31503772)
chr8 (320-417)||(3679052-3679149)
chr8 (429-527)||(17820059-17820158)
chr8 (549-640)||(3679406-3679497)
chr8 (549-595)||(17819879-17819925)
chr8 (552-644)||(30236154-30236246)
chr8 (600-657)||(24995408-24995465)
chr8 (600-657)||(31207375-31207432)
chr8 (600-657)||(37986871-37986928)
[»] chr4 (4 HSPs)
chr4 (573-657)||(39041287-39041371)
chr4 (599-663)||(2792281-2792345)
chr4 (586-656)||(2165505-2165574)
chr4 (534-640)||(6599975-6600081)
[»] scaffold0620 (1 HSPs)
scaffold0620 (576-651)||(3817-3892)
[»] chr6 (6 HSPs)
chr6 (576-651)||(34105400-34105475)
chr6 (395-490)||(5746424-5746519)
chr6 (600-644)||(32935365-32935409)
chr6 (615-644)||(9224067-9224096)
chr6 (534-595)||(15487622-15487682)
chr6 (615-644)||(33968639-33968668)
[»] chr2 (4 HSPs)
chr2 (534-641)||(23650331-23650437)
chr2 (600-657)||(39338878-39338935)
chr2 (600-644)||(31902440-31902484)
chr2 (599-644)||(4471933-4471978)
[»] scaffold0236 (1 HSPs)
scaffold0236 (619-673)||(10399-10452)
[»] chr7 (4 HSPs)
chr7 (316-362)||(26386589-26386635)
chr7 (566-642)||(34389939-34390015)
chr7 (615-644)||(12480912-12480941)
chr7 (547-632)||(43344918-43345003)
[»] chr5 (5 HSPs)
chr5 (315-357)||(25658554-25658596)
chr5 (600-644)||(25992018-25992062)
chr5 (618-651)||(28765621-28765654)
chr5 (615-644)||(31721703-31721732)
chr5 (600-657)||(34378109-34378166)
[»] scaffold1613 (1 HSPs)
scaffold1613 (600-644)||(1043-1087)
[»] scaffold0036 (2 HSPs)
scaffold0036 (684-721)||(64221-64258)
scaffold0036 (684-721)||(69363-69400)


Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 156 - 643
Target Start/End: Original strand, 31423810 - 31424290
Alignment:
Q  156 tcacgttggttttgtgtggttgtttggtgtggtactgttagcggtggagcgagatggttgcgtaggtttgtgtagttgtgtgtgatggtttgtagcgttc 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31423810 tcacgttggttttgtgtggttgtttggtgtggtactgttagcagtggagcgagatggttgtgtaggtttgtgtagtggtgtgtgatggtttgtagcgttc 31423909  T
Q  256 ggatggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 355  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423910 ggatggggtgattgtggataatttggactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagg 31424009  T
Q  356 gaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagct 455  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31424010 gaggtggatgtttttt-------tggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccatcgtcgctagct 31424102  T
Q  456 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31424103 cttggtgccttttggttgttttgtgtatgggtgcttgagtctgggtggttttgagttgagccttttccttttctgatgttggctagtcttcgtgtcttct 31424202  T
Q  556 ccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagt 643  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31424203 ccggttgatcgggggtgaggggtgccttactgatttgttttcagagtctggtaggccggtcgcttttgattcgagatcgggagtcagt 31424290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 316 - 532
Target Start/End: Original strand, 24712244 - 24712462
Alignment:
Q  316 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtggatgtttt-ttggtgttttggtggatggtagtgtactcttggtgtttctgttgt 414  Q
    ||||||||||||||||| |||| || ||| |||||||||||||||||||||||| |||||||| | |||| ||||||||  |||||||||||||||||||    
T  24712244 gagctgattaagtgggg-tggtagacgttttttaggtagggaggtggatgttttattggtgttgttgtgggtggtagtgagctcttggtgtttctgttgt 24712342  T
Q  415 aggctgcctttg-tcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagt 511  Q
    |||||||||||| | |||||||  ||||||||||||||||||||||||| ||||| |||| |||||||| ||| |||||||||  |||||||||| |||     
T  24712343 aggctgcctttgtttttgggtccatatccgtcgtcgctagctcttggtg-cttttagttgattttgtgtttggttgcttgagtgcgggtggttttcgagc 24712441  T
Q  512 tgagccttttccttttctgat 532  Q
    |||||||||||||| ||||||    
T  24712442 tgagccttttccttctctgat 24712462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31423655 - 31423725
Alignment:
Q  1 atgtggtggtggtgatgaaatggtggattgcaggtggtgagagagggtgccgtcagcgggaacaacagaga 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423655 atgtggtggtggtgatgaaatggtggattgcaggtggtgagagagggtgccgtcagcgggaacaacagaga 31423725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 635
Target Start/End: Original strand, 24712584 - 24712684
Alignment:
Q  534 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 633  Q
    |||||| ||| | ||||||||||||||||||||||| |||| ||||||||||||||||||||   |||| |||| |||| |||  |||| ||||||||||    
T  24712584 ttggctggtcatggtgtcttctccggttgatcgggg-tgaggggtgccttactgatttgtttctggagtatggtgggccggtcattttttattcgagatc 24712682  T
Q  634 gg 635  Q
    ||    
T  24712683 gg 24712684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 30127259 - 30127347
Alignment:
Q  586 tgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtt-tcttgacccaagtgtttttggcttgtttt 673  Q
    ||||||||||   |||||||||  |||  |||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  30127259 tgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttttttaggcttgtttt 30127347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 645
Target Start/End: Complemental strand, 24099421 - 24099352
Alignment:
Q  576 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagttt 645  Q
    ||||||||| ||||||||||  |||||||||| ||||  || |||||||||||| ||||||| |||||||    
T  24099421 ggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcgatatcgggaatcagttt 24099352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 673
Target Start/End: Complemental strand, 19295936 - 19295863
Alignment:
Q  599 gagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtttt 673  Q
    ||||||||| ||||  || |||||||||||| ||||| ||| ||||||||||| ||||| |||| ||||||||||    
T  19295936 gagtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagt-ttttgggcttgtttt 19295863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 644
Target Start/End: Original strand, 5556596 - 5556625
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||||||||||||||||||||||||    
T  5556596 tcgcttttgattcgagatcgggagtcagtt 5556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 17550968 - 17551025
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  17550968 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 17551025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 19176513 - 19176570
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  19176513 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 19176570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 9e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 615 - 757
Target Start/End: Original strand, 30655586 - 30655729
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtttcttgaccc-aagtgtttttggcttgttttctccagcagcctgaggattgattggtggtggaatcttaat 713  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30655586 tcgcttttgattcgagatcgggagtcagtttcttgaccccaagtgtttttggcttgttttctccagcagcctgaggattgattggtggtggaatcttaat 30655685  T
Q  714 tagttcgggtattttgctcagctgtggtgatgagaaggtgatgt 757  Q
    ||||| | ||||||||||||||||||||||||||||||||||||    
T  30655686 tagtttgagtattttgctcagctgtggtgatgagaaggtgatgt 30655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 650
Target Start/End: Complemental strand, 15840995 - 15840932
Alignment:
Q  587 gatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttga 650  Q
    |||||||||  |||||||||| |||   || |||||||||||||||||||||||||||||||||    
T  15840995 gatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttga 15840932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Complemental strand, 38544808 - 38544764
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||    
T  38544808 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 38544764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Original strand, 46603403 - 46603447
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||    
T  46603403 agtctggtgggccattcgcttttgattcgagatcgagagtcagtt 46603447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 642
Target Start/End: Original strand, 24658903 - 24658982
Alignment:
Q  563 atcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcag 642  Q
    ||||||||  || |||||| | |||||||| ||  | |||||||| ||||| || |||||||||||||||||||||||||    
T  24658903 atcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcag 24658982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 615 - 673
Target Start/End: Complemental strand, 2660895 - 2660838
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtttt 673  Q
    |||||||||||||||||| | |||||| ||||||||| ||||| | |||||||||||||    
T  2660895 tcgcttttgattcgagattgagagtcaatttcttgactcaagt-tgtttggcttgtttt 2660838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 652
Target Start/End: Complemental strand, 32876678 - 32876644
Alignment:
Q  618 cttttgattcgagatcgggagtcagtttcttgacc 652  Q
    |||||||||||||||||||||||| ||||||||||    
T  32876678 cttttgattcgagatcgggagtcactttcttgacc 32876644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 19598647 - 19598704
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  |||||||||||||||||||| |||||||||  ||||| |||||    
T  19598647 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagt 19598704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 31585830 - 31585773
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  31585830 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 31585773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 41920463 - 41920520
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  41920463 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 41920520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 260 - 490
Target Start/End: Complemental strand, 31503772 - 31503540
Alignment:
Q  260 ggggtggtcgtggataattttgactccgatttggcattgatacgattgatagacaagagctgattaagtgggggtggttgatgttgtttaggtagggagg 359  Q
    |||||||||||||||||| | ||||| ||| ||   | || ||  ||||| ||| ||||||||||||  |||| |||| ||  ||| ||||||||| |||    
T  31503772 ggggtggtcgtggataatctagactcagatctgaagtcgaaacatttgatggacgagagctgattaacaggggatggtagacattggttaggtaggaagg 31503673  T
Q  360 tggatgttttt-tggtgttttggtggatggtagtgtactcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctctt 458  Q
    ||||||||||| ||||||||||||||||||| |||  |||| | ||||||| ||||  || |||| ||| ||| |||  |||||| | ||||||||||||    
T  31503672 tggatgtttttatggtgttttggtggatggtggtgagctctagatgtttctattgtttgccgcctctgttttgagtccatatccgccatcgctagctctt 31503573  T
Q  459 ggtgccttttggttg-ttttgtgtatgggtgct 490  Q
    | ||| ||||||||| |||||| | ||||||||    
T  31503572 gttgcattttggttgcttttgtatttgggtgct 31503540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 3679052 - 3679149
Alignment:
Q  320 tgattaagtgggggtggttgatgttgtttaggtagggaggtggatgttttttggtgttttggtggatggtagtgtactcttggtgtttctgttgtagg 417  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||||  || |||||| |||| |||| |||  || |||||||||||||||||||    
T  3679052 tgattaagagggggtggtagacgttgtttaggtagggaggtgaatgtttaatgatgtttttgtgggtggtggtgagctattggtgtttctgttgtagg 3679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 429 - 527
Target Start/End: Complemental strand, 17820158 - 17820059
Alignment:
Q  429 ttgggtctgtatccgtcgtcgctagctcttggtgccttttggttg-ttttgtgtatgggtgcttgagtctgggtggtttt-gagttgagccttttccttt 526  Q
    |||||||  |||| |||||||||| |||||||||| ||||||||| |||||||| |||| |||||||| ||||||||||| ||| | |||||||||||||    
T  17820158 ttgggtccatatctgtcgtcgctaactcttggtgc-ttttggttgattttgtgtttgggagcttgagtgtgggtggttttcgagcttagccttttccttt 17820060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 549 - 640
Target Start/End: Original strand, 3679406 - 3679497
Alignment:
Q  549 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtc 640  Q
    |||||||||||||||||| ||||||| ||| | ||||||||||||||  |||||||    |||   || |||||||||||||||||||||||    
T  3679406 gtcttctccggttgatcgagggtgaggggtactttactgatttgtttctagagtctaactggcttatcacttttgattcgagatcgggagtc 3679497  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 595
Target Start/End: Complemental strand, 17819925 - 17819879
Alignment:
Q  549 gtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 595  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  17819925 gtcttctccggtagattgggggtgaggggtgccttactgatttgttt 17819879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 644
Target Start/End: Complemental strand, 30236246 - 30236154
Alignment:
Q  552 ttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||| ||| || ||||||| || |||||| | |||||||| |||   |||||||| || |  ||||||||||||||||||||||||||||||    
T  30236246 ttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagtt 30236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 24995465 - 24995408
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  24995465 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 24995408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 31207432 - 31207375
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  31207432 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagt 31207375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 37986928 - 37986871
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||| ||  ||||||||||||||||||||||||||  ||||| |||||    
T  37986928 agtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagt 37986871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 573 - 657
Target Start/End: Complemental strand, 39041371 - 39041287
Alignment:
Q  573 agaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||| ||||||| |||||||||| ||||||||||| ||||  || |||||||||||||||| ||||||||||||| ||| |||||    
T  39041371 agagatgccttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagt 39041287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 2792345 - 2792281
Alignment:
Q  599 gagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagtgttttt 663  Q
    |||||| |||||||  || |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  2792345 gagtctagtaggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagttttttt 2792281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 656
Target Start/End: Original strand, 2165505 - 2165574
Alignment:
Q  586 tgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaag 656  Q
    ||||||||||  ||||| |||| ||||  |||||||||||| |||||||||||||||||||||||| ||||    
T  2165505 tgatttgtttctagagtttggt-ggccgatcgcttttgatttgagatcgggagtcagtttcttgactcaag 2165574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 534 - 640
Target Start/End: Complemental strand, 6600081 - 6599975
Alignment:
Q  534 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 633  Q
    |||||||||  | ||||||||| |||| ||||| | |||||  |  |||||||||||||  |  |||||||||| ||||  |||||||||||| ||||||    
T  6600081 ttggctagttatggtgtcttcttcggtggatcgagcgtgaggaggaccttactgatttggctctagagtctggtgggccgatcgcttttgattagagatc 6599982  T
Q  634 gggagtc 640  Q
    |||||||    
T  6599981 gggagtc 6599975  T

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Target: scaffold0620 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 3817 - 3892
Alignment:
Q  576 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgac 651  Q
    ||||||| | ||||||||||| |||||||||| ||||  ||  |||||||||||||||||||||||||||||||||    
T  3817 ggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgac 3892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 34105400 - 34105475
Alignment:
Q  576 ggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgac 651  Q
    ||||||||| ||||||||||  ||||| |||| ||||  || ||||||||||||||||||||||||||||||||||    
T  34105400 ggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgac 34105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 5746424 - 5746519
Alignment:
Q  395 actcttggtgtttctgttgtaggctgcctttgtcttgggtctgtatccgtcgtcgctagctcttggtgccttttggttgttttgtgtatgggtgct 490  Q
    |||||| ||||||||||||| |   |||||||| |||| ||  |||||||||||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  5746424 actctttgtgtttctgttgttgatcgcctttgtgttggatccatatccgtcgtcgctagctcttgttgcgtttgggttgctttgtgtttgggtgct 5746519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Complemental strand, 32935409 - 32935365
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||    
T  32935409 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 32935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 644
Target Start/End: Original strand, 9224067 - 9224096
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||||||||||||||||||||||||    
T  9224067 tcgcttttgattcgagatcgggagtcagtt 9224096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 15487622 - 15487682
Alignment:
Q  534 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttt 595  Q
    |||||| ||| | |||||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  15487622 ttggctggtcatggtgtcttctctggttgatcgggggtg-gaggtaccttattgatttgttt 15487682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 644
Target Start/End: Complemental strand, 33968668 - 33968639
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||||||||||||||||||||||||    
T  33968668 tcgcttttgattcgagatcgggagtcagtt 33968639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 534 - 641
Target Start/End: Original strand, 23650331 - 23650437
Alignment:
Q  534 ttggctagtcttcgtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatc 633  Q
    |||||||||  | |||||||||  ||| |||||||| |||| ||| ||||||| ||||| ||  |||||||||| |||   |||||||||||||||||||    
T  23650331 ttggctagttatggtgtcttcttaggtggatcgggg-tgaggggtaccttacttatttggttctagagtctggtgggctgatcgcttttgattcgagatc 23650429  T
Q  634 gggagtca 641  Q
    ||||||||    
T  23650430 gggagtca 23650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 39338935 - 39338878
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||  ||||| |||||    
T  39338935 agtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagt 39338878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Complemental strand, 31902484 - 31902440
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||    
T  31902484 agtctggtgggccaatcgcttttaattcgagatcgggagtcagtt 31902440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 644
Target Start/End: Original strand, 4471933 - 4471978
Alignment:
Q  599 gagtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||| ||||  |||| |||||||||||||||||||||||||    
T  4471933 gagtctggtgggccgatcgcctttgattcgagatcgggagtcagtt 4471978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 673
Target Start/End: Complemental strand, 10452 - 10399
Alignment:
Q  619 ttttgattcgagatcgggagtcagtttcttgacccaagtgtttttggcttgtttt 673  Q
    |||||||||||||||| |||||||||||||||| ||||| | |||||||||||||    
T  10452 ttttgattcgagatcgagagtcagtttcttgactcaagt-tgtttggcttgtttt 10399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 26386635 - 26386589
Alignment:
Q  316 gagctgattaagtgggggtggttgatgttgtttaggtagggaggtgg 362  Q
    |||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  26386635 gagctgattaagagggggtggtagatgttgtttaggtaaggaggtgg 26386589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 642
Target Start/End: Original strand, 34389939 - 34390015
Alignment:
Q  566 gggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagatcgggagtcag 642  Q
    |||||||||  ||||| | |||||||| ||| | |||||||| ||||  || |||||||||||||||||||||||||    
T  34389939 gggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcag 34390015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 644
Target Start/End: Original strand, 12480912 - 12480941
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||||||||||||||||||||||||    
T  12480912 tcgcttttgattcgagatcgggagtcagtt 12480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 632
Target Start/End: Complemental strand, 43345003 - 43344918
Alignment:
Q  547 gtgtcttctccggttgatcgggggtgagaggtgccttactgatttgttttcagagtctggtaggccagtcgcttttgattcgagat 632  Q
    ||||||||| |||| |||||||| |||| ||| ||||| ||||||  ||  |||||||||| | || ||||||||||||| |||||    
T  43345003 gtgtcttcttcggtggatcggggatgaggggtaccttattgatttcgttatagagtctggtggaccggtcgcttttgatttgagat 43344918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 25658596 - 25658554
Alignment:
Q  315 agagctgattaagtgggggtggttgatgttgtttaggtaggga 357  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  25658596 agagctgattaagagggggtggttgatgttatttaggtaggga 25658554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Original strand, 25992018 - 25992062
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||    
T  25992018 agtctggtgggccaatcgcttttgattcgagatcgagagtcagtt 25992062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 651
Target Start/End: Complemental strand, 28765654 - 28765621
Alignment:
Q  618 cttttgattcgagatcgggagtcagtttcttgac 651  Q
    ||||||||||||||||| ||||||||||||||||    
T  28765654 cttttgattcgagatcgagagtcagtttcttgac 28765621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 644
Target Start/End: Original strand, 31721703 - 31721732
Alignment:
Q  615 tcgcttttgattcgagatcgggagtcagtt 644  Q
    ||||||||||||||||||||||||||||||    
T  31721703 tcgcttttgattcgagatcgggagtcagtt 31721732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 34378109 - 34378166
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtttcttgacccaagt 657  Q
    |||||||| ||||  || |||||||||||||||||||||||||||  ||||| |||||    
T  34378109 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagt 34378166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 600 - 644
Target Start/End: Complemental strand, 1087 - 1043
Alignment:
Q  600 agtctggtaggccagtcgcttttgattcgagatcgggagtcagtt 644  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||    
T  1087 agtctggtgggccgatcgcttttgattcgagatcgggagtcagtt 1043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 721
Target Start/End: Complemental strand, 64258 - 64221
Alignment:
Q  684 ctgaggattgattggtggtggaatcttaattagttcgg 721  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  64258 ctgaggattgatcggtggtggaatctgaattagttcgg 64221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 721
Target Start/End: Complemental strand, 69400 - 69363
Alignment:
Q  684 ctgaggattgattggtggtggaatcttaattagttcgg 721  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  69400 ctgaggattgatcggtggtggaatctgaattagttcgg 69363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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