View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_high_52 (Length: 322)
Name: NF7739_high_52
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_high_52 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 45 - 322
Target Start/End: Complemental strand, 3367692 - 3367415
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3367692 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
3367593 |
T |
|
| Q |
145 |
tggtagaagtataactttttgtaaaaacatatgcttatttacttatttatagatttctcaactgggattatgatgcctaaggaagctatttgttcctaaa |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3367592 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
3367493 |
T |
|
| Q |
245 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtt |
322 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3367492 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatatttggtggcttaatctttgtt |
3367415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 7710917 - 7710971
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaattt |
99 |
Q |
| |
|
|||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7710917 |
caaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt |
7710971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 22884134 - 22884213
Alignment:
| Q |
50 |
tattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgact---gtgttttgcaattgtgtgcttat |
126 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
22884134 |
tattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttactctattattttgcaattgtgtgcttat |
22884213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 45 - 322
Target Start/End: Complemental strand, 54188604 - 54188327
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54188604 |
caaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagatgactggt |
54188505 |
T |
|
| Q |
145 |
tggtagaagtataactttttgtaaaaacatatgcttatttacttatttatagatttctcaactgggattatgatgcctaaggaagctatttgttcctaaa |
244 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54188504 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttttcaattgggattatgatgcctaaggaagctatttgttcctaaa |
54188405 |
T |
|
| Q |
245 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtt |
322 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54188404 |
ttatgttttgctttttgagactattgtgttttgttgtttaccatttaatctaccatatttggtggcttaatctttgtt |
54188327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 45 - 322
Target Start/End: Original strand, 8570574 - 8570851
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8570574 |
caaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttaggaaagaggactgga |
8570673 |
T |
|
| Q |
145 |
tggtagaagtataactttttgtaaaaacatatgcttatttacttatttatagatttctcaactgggattatgatgcctaaggaagctatttgttcctaaa |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8570674 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
8570773 |
T |
|
| Q |
245 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtt |
322 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8570774 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatattaggtggcttaatctttgtt |
8570851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 28462519 - 28462446
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
118 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
28462519 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
28462446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 2550303 - 2550261
Alignment:
| Q |
69 |
aggtgtttgataatttgactcaatgaaatttgactgtgttttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
2550303 |
aggtgtttgataatttgactcaatgaaatttaactttgttttg |
2550261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 45 - 322
Target Start/End: Original strand, 28696534 - 28696811
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttaggaaagaggactggt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28696534 |
caaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaatttgactatgttttgcaattgtgtgcttatttaggaaagaggactggt |
28696633 |
T |
|
| Q |
145 |
tggtagaagtataactttttgtaaaaacatatgcttatttacttatttatagatttctcaactgggattatgatgcctaaggaagctatttgttcctaaa |
244 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28696634 |
tggtagaagtagaactttttgtaaaaacatatgcttatttacttatttatagatttctcaattgggattatgatgcctaaggaagctatttgttcctaaa |
28696733 |
T |
|
| Q |
245 |
ttatgttttctcttttgagactattttgttttgttgtttaccatttaatctacaatatttggtggcttaatctttgtt |
322 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
28696734 |
ttatgttttgccttttgagactattgtgttttgttgtttaccatttaatctaccatattaggtggcttaatctttgtt |
28696811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 23361689 - 23361760
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
116 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
23361689 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaatt |
23361760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 7489010 - 7488970
Alignment:
| Q |
211 |
attatgatgcctaaggaagctatttgttcctaaattatgtt |
251 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
7489010 |
attatgacgcctaaggaagttatttgatcctaaattatgtt |
7488970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 7600004 - 7600077
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
118 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
7600004 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
7600077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 12038237 - 12038167
Alignment:
| Q |
46 |
aaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
116 |
Q |
| |
|
||||| |||||||| || ||| | ||||||||| |||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
12038237 |
aaggtgttattgtgttgagtatgaagtgtttgatgattttactaaatgaaatttgactctgttttgcaatt |
12038167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 45402102 - 45402175
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaattgt |
118 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45402102 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaattgt |
45402175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 19611250 - 19611321
Alignment:
| Q |
45 |
caaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgactgtgttttgcaatt |
116 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
19611250 |
caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaatttgaacctgttttgcaatt |
19611321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 23241019 - 23241068
Alignment:
| Q |
54 |
attgtgctgcctatcaggtgtttgataatttgactcaatgaaatttgact |
103 |
Q |
| |
|
|||||| ||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23241019 |
attgtgttgcatatgaagtgtttgataatttgactcaatgaaatttgact |
23241068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 7274929 - 7274877
Alignment:
| Q |
78 |
ataatttgactcaatgaaatttgactgtgttttgcaattgtgtgcttatttag |
130 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
7274929 |
ataatttcactcaataaaatttgactgtgttttacaattgtatgcgtatttag |
7274877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University