View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_high_55 (Length: 315)

Name: NF7739_high_55
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_high_55
NF7739_high_55
[»] chr6 (1 HSPs)
chr6 (1-297)||(23935607-23935901)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 23935607 - 23935901
Alignment:
Q  1 aaacaacaagaaacctaaacacaaacaaaatgaagaacacggaaactacattatgaatatatatgctaaatttacgaagatattctttctcattttcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  23935607 aaacaacaagaaacctaaacacaaacaaaatgaagaacacagaaactacattatgaatatatatgctaaatttacgacgatattctttct--ttttcttc 23935704  T
Q  101 tttgaaagaatt-tttgaacctgaataagaaacttttgtgtaacaggtttttggttacattggtcataaacgaaaaaagaagaaaagatgagaatgttac 199  Q
    | |||| ||||  ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23935705 tatgaacgaatgctttgaacctgaaatagaaacttttgtgtaacag-tttttggttacattggtcataaacgaaaaaagaagaaaagatgagaatgttac 23935803  T
Q  200 caagtttagtgatgaaaaaggaattgaatggctttcttttttctcaagaaaatgaaaatggggttttccaggaaaatgcaggtttgtgaatttgagag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23935804 caagtttagtgatgaaaaaggaattgaatggctttcttttttctcaagaaaatgaaaatggggttttccaggaaaatgcaggtttgtgaatttgagag 23935901  T

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