View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_10 (Length: 654)
Name: NF7739_low_10
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 330 - 636
Target Start/End: Original strand, 25731327 - 25731634
Alignment:
| Q |
330 |
tcccttacgtgatttggtgcattgagttttttgagaaaattaaggaatagtttcaggaccgaaattatataaatagaggatctgtgtagatgttttttca |
429 |
Q |
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| T |
25731327 |
tcccttacgtgatttggtgcattgagttttttgagaaaattaaggaatagtttcaggaccaaaattatataaatataggatctgtgtagatgttttttca |
25731426 |
T |
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| Q |
430 |
tcaccaaatgcgatacaacctgtatagc-ttgcatcacaaaagtactacaatttccttactctttttctcatcatgtctacttctacccaaaacactgcc |
528 |
Q |
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| T |
25731427 |
tcaccaaatgcgatacaacctgtatagcattgcattacaaaagtactacaatttccttactctttttctcatcatgtctacttctacccaaaacactgcc |
25731526 |
T |
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| Q |
529 |
cctggtactaatgcccagtgaacacctttcaatccatccaacaaaacccagatggcatccttatggaaaccaaaaaataaagtggacatctccttgatgg |
628 |
Q |
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| T |
25731527 |
cctggtactaatgcccagtgaacacctttcaatccatccaacaaaacccagatggcatccttatggaaaccaaaaaataaagtggacatctccttgatgg |
25731626 |
T |
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| Q |
629 |
accataat |
636 |
Q |
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| T |
25731627 |
accataat |
25731634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 65 - 279
Target Start/End: Original strand, 25731067 - 25731283
Alignment:
| Q |
65 |
tttggtggattcctgttttggttatattggcctcagtttgctcttttgattatcacatgggcg--acaacaatccttaatttttatgatatgttatttct |
162 |
Q |
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| T |
25731067 |
tttggtggattcctgttttggttatattggcctcagtttgctcttttgattatcacatgggcgcgacaacaatccttaatttttatgatatgttatttcc |
25731166 |
T |
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| Q |
163 |
ttttcggatgttgcgaatgtcacctctcatgaattagaacatcctgtgcgtgattcagcttctattctcctgcattattggaatactggtattttatgta |
262 |
Q |
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| T |
25731167 |
ttttcggatgttgcgaatgtcacctctcatgaattagaacatcctgtgcgtgattcagcttccattctcctgcattattggaatactgctattttatgta |
25731266 |
T |
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| Q |
263 |
tccatatccatgtcatt |
279 |
Q |
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| T |
25731267 |
tccatatccatatcatt |
25731283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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