View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_11 (Length: 639)
Name: NF7739_low_11
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 15 - 618
Target Start/End: Complemental strand, 45974691 - 45974089
Alignment:
| Q |
15 |
tttggtgttggaggagtagacgaggaaagtgactttgtggttggagtgtcgttttcgattggagatttgatggagttgacgattttgtccttatcttgat |
114 |
Q |
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| T |
45974691 |
tttggtgttggaggagtagacgaggaaagtgactttgtggttggagtgtcgttttcgattggagatttgatggagttgacgattttgtccttatcttgat |
45974592 |
T |
|
| Q |
115 |
ctaatagctttttggatgattcatccaatcctcgctccggaaattgacgcgggaaaaagtaagttgctctatgtggcattttcactcacgagcctcttgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974591 |
ctaatagctttttggatgattcatccaatcctcgctccggaaattgacgcgggaaaaagtaagttgctctatgtggcattttcactcacgagcctcttgc |
45974492 |
T |
|
| Q |
215 |
tgccacgtagcaaaccaagaaacaaacggaaacttggccgttaccgacaccgtcctcttcgctgnnnnnnnnnnnnnnnnnnnctcaacgcatgcaaatc |
314 |
Q |
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| T |
45974491 |
-gccacgtagcaaaccaagaaacaaacggaaacttggccgttaccgacaccgtcctcttcgttgctgttcttcttcttctttcctcaacgcatgcaaatc |
45974393 |
T |
|
| Q |
315 |
tcttattgcaacaatcaaataacagcacttgaactaattattatgcataatatatagttggaagctgaattgtattttactcttaagaaacttagaagac |
414 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974392 |
tcttattgcaacaatcaaataacagcacttcaactaattattatgcataatatatagttggaagctgaattgtattttactcttaagaaacttagaagac |
45974293 |
T |
|
| Q |
415 |
agattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974292 |
agattgataagtataatcgcgtagttgcgatgtttaaagcgggatatggttttccgataaagaggaaatgtgatatgctatagtgctaataataatggag |
45974193 |
T |
|
| Q |
515 |
gtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974192 |
gtactggtaactgaaaaacacagagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgt |
45974093 |
T |
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| Q |
615 |
aatg |
618 |
Q |
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|||| |
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| T |
45974092 |
aatg |
45974089 |
T |
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