View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_14 (Length: 583)
Name: NF7739_low_14
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 7869679 - 7869398
Alignment:
| Q |
13 |
tttggtgttagaagaaggaagaatgttgtgatataattgaaggagtggttgataggtcatttgattatagattagtgctaattattgtattttagtttct |
112 |
Q |
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| T |
7869679 |
tttggtgttagaagaaggaagaatgttgtgatataattgaaggagtggttgataggtcatttgattatagattagtgctaattattgtattttagtttct |
7869580 |
T |
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| Q |
113 |
ctatgatttttgtttcggttagtctcggaaaactttcactaagattttcgatatgggaatcgattcatgtatgttcaattttgaaaacatttgatgaggt |
212 |
Q |
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| T |
7869579 |
ctatgatttttgtttgggttagtctcgggaaactttcactaagattttcgatatgggaatcgattcatgtatgttcaattctgaaaacattttatgaggt |
7869480 |
T |
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| Q |
213 |
ggatgagtgtgatttttaaaagggctaaaattagtatttttaataatttatagggtatgggtataataatagttttggtgtatgg |
297 |
Q |
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| T |
7869479 |
ggatgagtgtgatttttaaaagggctaaaattagtatttttaataatttatagggtataggt---ataatagttttggtgtatgg |
7869398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 353 - 583
Target Start/End: Complemental strand, 7869342 - 7869114
Alignment:
| Q |
353 |
gacaatactcacttactccttctgttggcgaggccattctttgcaaaaaagtgagttacgatattgtatgaattcacaactaatctcacctataataatt |
452 |
Q |
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| T |
7869342 |
gacaatactcactcactccttctgttggcgaggccattctttgcaaaagaatgagttacgatattgcatgaattcacaactgatctcacctataataatt |
7869243 |
T |
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| Q |
453 |
aagtggacattgaaatgtgtttacgtgatggcgaagaacannnnnnnnncatgcaaaaacgacgacatttaacccatatttgacaattaagaaggggaag |
552 |
Q |
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| T |
7869242 |
aagtgggcattgaaatgtgtttacgtgatggcgaagaata--tttttttcatgcgaaaacgacgacatttaacccatatctaacaattaagaaggggaag |
7869145 |
T |
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| Q |
553 |
ctttcgatctttgtcgagctattcattggat |
583 |
Q |
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| T |
7869144 |
ctttcgatctttgtcgagctattcattggat |
7869114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 583
Target Start/End: Complemental strand, 7869090 - 7869056
Alignment:
| Q |
549 |
gaagctttcgatctttgtcgagctattcattggat |
583 |
Q |
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| T |
7869090 |
gaagctttcgatctttgtcgagctattcattggat |
7869056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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