View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_low_17 (Length: 533)
Name: NF7739_low_17
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 518
Target Start/End: Original strand, 1495013 - 1495511
Alignment:
| Q |
12 |
aacctgtgaaagaattttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctcttttaaccattgcaactttcc |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1495013 |
aacctttgaaagaattttgttcatgaatggttatattgcttcaactgtaaagctttacaccttttctctaaatggtctcttttaaccattgcaactttcc |
1495112 |
T |
|
| Q |
112 |
aatgtaataccgaaaaagtgtcaagtcctattaacgtgaaatatatataaataagattcacttcaatttcagatcatcgctggtagaag-aattatttag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1495113 |
aatgtaataccgaaaaagtgtcaagtcctattaacgtgaaatatatataaataagattcacttcaatttcagatcatcgctggtagaagaaattatttat |
1495212 |
T |
|
| Q |
211 |
cagtgacagaattcaatctcatagaaatactattcacaacaaagtctaagaagtcctcaatatgaagaggaagaggacaaactctttcaattcttcacaa |
310 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1495213 |
cagtcacagaattcaatctcatagaaatactattcacaacaaactctaagaagtcctcaatatgaagaggaagaggacaaactctttcaattcttc---- |
1495308 |
T |
|
| Q |
311 |
caacaacaacaatctatttcttccattataactagaagtaaatcaatggcttcaaaattttatttacctgaacattgttgggaacatatcttaagattgc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1495309 |
-----acaacaatctatttcttccattataactagaagtaaatcaaaggctgcaaaattttatttacctgaacattgttgggaacatatcttaagattgc |
1495403 |
T |
|
| Q |
411 |
tcggagacaacccacttagagatgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgcta |
510 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1495404 |
tcggagacaacccacttagagacgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgcta |
1495503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 507
Target Start/End: Original strand, 1516584 - 1517077
Alignment:
| Q |
25 |
attttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctcttttaaccattgcaactttccaatgtaat----- |
119 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
1516584 |
attttgttcatgaatggttatattgcgtcatttctaaagcactacaccttttctctaaaatgtctcttttaaccattgcaattttccaatgtaatccaaa |
1516683 |
T |
|
| Q |
120 |
--accgaaaaagtgtcaagtcctattaacgtgaaatatatataaataagattcacttcaatttcagatcatcgctggtagaagaattatttagcagtgac |
217 |
Q |
| |
|
|| |||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
1516684 |
atacagaaaaagtgtcatgtcctattaacttgaaatatatattaataagatttacttcaatttcagaccatcgctggtagaagaaatatttagcagtggc |
1516783 |
T |
|
| Q |
218 |
agaattcaatctcatagaaatactattca---caac----------aaagtctaagaagtcctcaatatgaagaggaagaggacaaactctttcaattct |
304 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |||| | | |||||||||||||| |||||| |||||||||||||||| |||||||||| |
|
|
| T |
1516784 |
agacttcaatctcatagaaatacgattcaattcaactccaattggaacaccctaagaagtcctcagtatgaaaaggaagaggacaaactttttcaattct |
1516883 |
T |
|
| Q |
305 |
tcacaacaacaacaacaatctatttcttccattataactagaagtaaatcaatggcttcaaaattttatttacctgaacattgttgggaacatatcttaa |
404 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| | |
|
|
| T |
1516884 |
tcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctgcaaaattttatttacctgaagattgttgggaacatgtcttca |
1516983 |
T |
|
| Q |
405 |
gattgctcggagacaacccacttagagatgatgaggaagacccctacaaatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccg |
504 |
Q |
| |
|
| |||||||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1516984 |
gtttgctcggagacaa---------aaccgatgaggatgacccctacaaatatgtctccctcgtttccaaacaattcttgtccatcaccaaccgtctccg |
1517074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 66 - 518
Target Start/End: Original strand, 1533137 - 1533576
Alignment:
| Q |
66 |
ttacaccttttctctaaatggtctcttttaaccattgcaactttccaatgtaataccgaaaaagtgtcaagtcctattaacgtgaaatatatataaataa |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| | ||||| |||||||||||||||||| |
|
|
| T |
1533137 |
ttacaccttttctctaataggtctcttttaaccattgcaactttccaatgtaatcc---aaaact-----------ttaacttgaaatatatataaataa |
1533222 |
T |
|
| Q |
166 |
gattcacttcaatttcagatcatcgctggtagaagaattatttagcagtgacagaattcaatctcatagaaatactattcacaacaa------------- |
252 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||| ||| |
|
|
| T |
1533223 |
gattcacttcaattttagaccatcgctggtagaagaaatatttagcagtggcagacttcaatctcatagaaatacgattcacttcaattccaataggaac |
1533322 |
T |
|
| Q |
253 |
agtctaagaagtcctcaatatgaagaggaagaggacaaactctttcaattcttcacaacaacaacaacaatctatttcttccattataactagaagtaaa |
352 |
Q |
| |
|
| |||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1533323 |
accctaagaagtcctcattatgaaaaggaagaggacaaactcttttgattcttcacaa---caacaacaatcgatttcttccattataagtagaagtaaa |
1533419 |
T |
|
| Q |
353 |
tcaatggcttcaaaattttatttacctgaacattgttgggaacatatcttaagattgctcggagacaacccacttagagatgatgaggaagacccctaca |
452 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
1533420 |
tcaatggctgcaaaattttatttacctgaagattgttgggaacatgtcttaagattgctcggatacaacac---------cgatggggaagacccctaca |
1533510 |
T |
|
| Q |
453 |
aatatgtctccctcgtttgcaaacaattcttgtccatcaccaaccgtctccgatgctatctttctg |
518 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||| |||| |
|
|
| T |
1533511 |
aatatgtctccctcgtttccaaaaaattcttgtccattaccaaccgtctccgattctatctctctg |
1533576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 48780120 - 48780202
Alignment:
| Q |
31 |
ttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctcttttaaccattgcaactttccaa |
113 |
Q |
| |
|
||||||||| ||||||||||||||| || || | ||| |||||||||||||| | ||| ||||| |||||||||||||||| |
|
|
| T |
48780120 |
ttcatgaatagttatattgcttcaattgtcaaacattataccttttctctaaaagatcttgtttaatcattgcaactttccaa |
48780202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 12729253 - 12729166
Alignment:
| Q |
27 |
tttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaactttccaa |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
12729253 |
tttgctcatgaatggttatattgcttcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaactttccaa |
12729166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 28696338 - 28696421
Alignment:
| Q |
27 |
tttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaacttt |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||| || |||| |||||| ||||||||||| | ||||| |||| ||||||||||||| |
|
|
| T |
28696338 |
tttgttcatgaatggttacattgcttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaacttt |
28696421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 36202978 - 36202895
Alignment:
| Q |
27 |
tttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt |
109 |
Q |
| |
|
|||||||||||||||||| |||| ||||| || |||| |||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
36202978 |
tttgttcatgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttt |
36202895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 29006336 - 29006244
Alignment:
| Q |
25 |
attttgttcatgaatggttatattgcttcaaccgtaaagctttacac---cttttctctaaatggtctcttttaaccattgcaactttccaat |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| | |||||| |||| |||||| | |||||||||| ||||||||||| |||| |
|
|
| T |
29006336 |
attttgttcatgaatggttacattgcttcaatcgtaaaacattacacttttttttttctaaaagatctcttttaattattgcaacttttcaat |
29006244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 50914667 - 50914746
Alignment:
| Q |
31 |
ttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaacttt |
109 |
Q |
| |
|
||||||||||||| |||||||||| || |||| |||||||||| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
50914667 |
ttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttt |
50914746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 33709667 - 33709598
Alignment:
| Q |
46 |
attgcttcaaccgtaaagctttacaccttttctcta--aatggtctcttttaaccattgcaactttccaa |
113 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | || || ||||||||||||||||||||||||||||| |
|
|
| T |
33709667 |
attgcttcaattgtaaagcattacaccttttttttataaaaggtctcttttaaccattgcaactttccaa |
33709598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 12239877 - 12239961
Alignment:
| Q |
27 |
tttgttcatgaatggttatattgcttcaaccgtaaagctttacaccttttctctaaatggtctct-tttaaccattgcaactttc |
110 |
Q |
| |
|
|||||||||||||||||| ||||| |||| || |||| ||||| ||||| ||||| ||||| | ||||||||||||||||||| |
|
|
| T |
12239877 |
tttgttcatgaatggttacattgcatcaattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgcaactttc |
12239961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University