View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_19 (Length: 520)
Name: NF7739_low_19
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 112 - 502
Target Start/End: Complemental strand, 19082771 - 19082388
Alignment:
| Q |
112 |
atcagaaaacaagaatttgacatggttcaaatttttaatctcaaaaagattttagtccatggatttgtttctctaaaattttagtctatgttttacaagt |
211 |
Q |
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| T |
19082771 |
atcagaaaacaagaatttgacatggttcaaatttttaatctcaaaaagattttagtccatgcatttgtttatctaaaattttagtctatgttttacaatt |
19082672 |
T |
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| Q |
212 |
ttaaaatttctttcacacaactcgttttcaaacgatt-ttttatgacatgccatattaattaattgatgatgtggagttatattatttttttagnnnnnn |
310 |
Q |
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| T |
19082671 |
ttaaaatttctttcgcacaactcgttttcaaacgatttttttatgacatgccatattaattaattgatgatgtggaattatattatttttttagaaaaaa |
19082572 |
T |
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| Q |
311 |
nnnnnnnnnnntgtggaattatatttgattatgtggtaaattaataatgtaatgtcatcgtgattcaacgtattattcnnnnnnnttacaggtcataaaa |
410 |
Q |
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| T |
19082571 |
aaaa--------gtggaattatatttgattatgtggtaaattaataatgtaatgtcatcgtgattcaacgtattattcaaaaaatttacacgtcataaaa |
19082480 |
T |
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| Q |
411 |
aataagccacaaacttatttgcagagaaaaatcataaagcttgaaaaactagaaacataaaaatcttgctttaagtgtaactatgccaattc |
502 |
Q |
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| T |
19082479 |
aataagccacaaacttatttgcagagaaaaatcataaagcttgaaaaactagaaacattaaaatcttgctttaagtgtaactatgccaattc |
19082388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 19082816 - 19082779
Alignment:
| Q |
45 |
ccattttatgacggttttgggtgaaagaaaaatgacat |
82 |
Q |
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| T |
19082816 |
ccattttatgacggttttgggtgaaagaaaaatgacat |
19082779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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