View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_2 (Length: 870)

Name: NF7739_low_2
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_2
NF7739_low_2
[»] chr5 (6 HSPs)
chr5 (490-855)||(27314106-27314471)
chr5 (1-396)||(27314805-27315189)
chr5 (394-471)||(27314760-27314835)
chr5 (328-376)||(9511927-9511975)
chr5 (1-76)||(24137457-24137534)
chr5 (318-376)||(11335326-11335384)
[»] chr1 (2 HSPs)
chr1 (294-375)||(3775076-3775155)
chr1 (258-338)||(3774978-3775058)
[»] chr3 (3 HSPs)
chr3 (318-376)||(42530811-42530869)
chr3 (1-76)||(22821033-22821110)
chr3 (429-466)||(42530816-42530853)
[»] chr7 (3 HSPs)
chr7 (176-324)||(10236694-10236836)
chr7 (1-76)||(24486650-24486727)
chr7 (43-76)||(17921417-17921450)
[»] chr4 (3 HSPs)
chr4 (322-374)||(24225694-24225746)
chr4 (1-76)||(54148135-54148212)
chr4 (287-373)||(24225661-24225749)
[»] chr2 (3 HSPs)
chr2 (317-376)||(38583929-38583987)
chr2 (1-76)||(8986787-8986864)
chr2 (265-306)||(2484620-2484661)
[»] chr8 (1 HSPs)
chr8 (1-76)||(5616789-5616866)
[»] chr6 (1 HSPs)
chr6 (43-76)||(18984358-18984391)


Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 490 - 855
Target Start/End: Complemental strand, 27314471 - 27314106
Alignment:
Q  490 tacaaatgagtggatagaaggaatacttaagccactcacaaatacaaaccaaaagaggcattgcaaactaaattgaatcaaactaatccaaaacaatagg 589  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27314471 tacaaattagtggatagaaggaatacttaagccactcacaaatacaaaccaaaagagtcattgcaaactaaattgaatcaaactaatccaaaacaatagg 27314372  T
Q  590 acagagaaagacaaatgtcaaacaacacccataaataacactacaaattttgtgtggaacattgcaagcttcctttcaattttgacttagaccaaaacaa 689  Q
    |||||||| ||||||| |||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314371 acagagaaggacaaatttcaatcaaaccccataaataacactgcaaattttgtgtggaacattgcaagcttcctttcaattttgacttagaccaaaacaa 27314272  T
Q  690 aaaacatagagacaacaaccctctggttttaccttcaaagtgcatcaacaaaaaatcaacggcatcaacctatggaatacaaccagacaactagcaaact 789  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27314271 aaaacatagagacaacaaccctctggttttaccttcaaagtgcatcaacaaaaaatcaacggcatcaacctatggaatacaaccaggcaactagcaaact 27314172  T
Q  790 tcggcgagataaaacaattcagcgaggggtttgaacagtacgccaaattccaaaaaacttcatttt 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314171 tcggcgagataaaacaattcagcgaggggtttgaacagtacgccaaattccaaaaaacttcatttt 27314106  T

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Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 27315189 - 27314805
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatttatccnnnnnnnntaaactaaa 98  Q
    |||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  27315189 aaaatatattaaataatatgaagttttaacactacccctcaaggtaaagcttactaagttttaagcttgttacaaatttatccaaaaaaaataaactaaa 27315090  T
Q  99 tcagttgataatagaatcaacggaaagtagtaacgaaagtgaattatcatagagagtgcagccaaaaccatcaccatacaaagagagaattcatccaaac 198  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  27315089 tcagttgatagtagaatcaacggaaagtagtaacgaaagtgagttatcatagagagtgcagccaaaaccatcaccatacaaagagagaattcatcaaaa- 27314991  T
Q  199 agaagaatcaagtcatcaaatcaatccaaacaaatgagccggtagggagaagcgaccataaataataagaaccaatagagagaggtgcaaccaaacagaa 298  Q
          | |||||||   || ||||| ||||||||||||  ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  27314990 ------accaagtca---aaccaatctaaacaaatgagctagtagggagaagcgaccataaataa---gaaccaatagagagaggtgcaaccaaacagaa 27314903  T
Q  299 gaatcaaatgggacagaaacaatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaagggagggaagtataatcaataat 396  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27314902 gaatcaaaagggacagaaacaatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaagggagagaagtataatcaataat 27314805  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 27314835 - 27314760
Alignment:
Q  394 aatcaaaagggggagaagtattaaatcaataatagtcaaaatgggaagaagtgcaatcaatcagaataatcaatatga 471  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27314835 aatcaaaagggagagaagtat--aatcaataatagtcaaaatgggaagaaatgcaatcaatcagaataatcaatatga 27314760  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 9511975 - 9511927
Alignment:
Q  328 gaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaaggg 376  Q
    |||||||||| ||||||||||||||||||||||| || |||||||||||    
T  9511975 gaagaatcaatatggggagaagtgcaatcaatcagaagaatcaaaaggg 9511927  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 24137534 - 24137457
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| ||| |||||||||| ||||  |||||||||||   ||| |||||||||||||| |||||||||||||||||||    
T  24137534 aaaacatactaaataatataaagttctaacactacccctcaagctaaagcttactaagctttaagcttgttacaaatt 24137457  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 11335326 - 11335384
Alignment:
Q  318 caatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaaggg 376  Q
    ||||||| | |||||||||| | ||||||||||| ||||||||| || |||||||||||    
T  11335326 caatcaatcagaagaatcaatagggggagaagtgtaatcaatcaaaagaatcaaaaggg 11335384  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 3775076 - 3775155
Alignment:
Q  294 cagaagaatcaaatgggacagaaacaatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaagg 375  Q
    ||||||||||||| | || |||||||||| | | |||||||||||||||||||||  ||||||||||| || ||||||||||    
T  3775076 cagaagaatcaaaagagagagaaacaatcgatcagaagaatcaaaatggggagaa--gcaatcaatcaaaagaatcaaaagg 3775155  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 3774978 - 3775058
Alignment:
Q  258 aaataataagaaccaatagagagaggtgcaaccaaacagaagaatcaaatgggacagaaacaatcaaaccgaagaatcaaa 338  Q
    |||| ||||||| |||||||||| || |||||||||||| ||||||||| | || || | ||| ||||| |||||||||||    
T  3774978 aaatcataagaatcaatagagagtggagcaaccaaacaggagaatcaaaagagagaggagcaaccaaacagaagaatcaaa 3775058  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 42530869 - 42530811
Alignment:
Q  318 caatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaaggg 376  Q
    ||||||| | |||||||||||| ||| ||||||||||||||||| || |||||||||||    
T  42530869 caatcaatcagaagaatcaaaaggggaagaagtgcaatcaatcagaagaatcaaaaggg 42530811  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22821033 - 22821110
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| |||||||||||||| ||||  |||||||||||   ||| |||||| ||||||| ||||| |||||||||||||    
T  22821033 aaaagatattaaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaatt 22821110  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 42530853 - 42530816
Alignment:
Q  429 tcaaaatgggaagaagtgcaatcaatcagaataatcaa 466  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  42530853 tcaaaaggggaagaagtgcaatcaatcagaagaatcaa 42530816  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 324
Target Start/End: Complemental strand, 10236836 - 10236694
Alignment:
Q  176 acaaagagagaattcatccaaacagaagaatcaagtcatcaaatcaatccaaacaaatgagccggtagggagaagcgaccataaataataagaaccaata 275  Q
    ||||||||| || ||||||||||| ||||| |||||||   ||  |||||||||||| || ||| ||||||||||| ||||||    | |||||||||||    
T  10236836 acaaagagaaaaatcatccaaacaaaagaaccaagtca---aacaaatccaaacaaaagaaccgctagggagaagcaaccata---tagaagaaccaata 10236743  T
Q  276 gagagaggtgcaaccaaacagaagaatcaaatgggacagaaacaatcaa 324  Q
    || |||||  | | ||| ||||||||||| | |||| | ||||||||||    
T  10236742 gaaagaggaacgatcaaccagaagaatcacaagggagataaacaatcaa 10236694  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 24486650 - 24486727
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactaccc--gaaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| ||| |||||||||| || |  |||||||||||  |||| |||||||||||||| |||||| ||||||||||||    
T  24486650 aaaacatactaaataatataaacttctaacactacccttgaagttaaagcttactaagctttaagtttgttacaaatt 24486727  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 17921417 - 17921450
Alignment:
Q  43 taaagcttactaagttttaagcttgttacaaatt 76  Q
    |||||||||||||| |||||||||||||||||||    
T  17921417 taaagcttactaagctttaagcttgttacaaatt 17921450  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 24225746 - 24225694
Alignment:
Q  322 caaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaag 374  Q
    ||||| |||||||||||| |||||||| |||||||||||| || |||||||||    
T  24225746 caaacagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaag 24225694  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 54148212 - 54148135
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| ||| |||||||||| || | ||||||||||||   ||| | |||||||||||| |||||||||||||||||||    
T  54148212 aaaacatagtaaataatataaacttttaacactacccctcaagctgaagcttactaagctttaagcttgttacaaatt 54148135  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 24225749 - 24225661
Alignment:
Q  287 aaccaaacagaagaatcaaatgggacagaaa--caatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaa 373  Q
    |||||||||||||||||||| |||  |||||  ||||||| | ||||||||||||  || | ||||||||| ||||| || ||||||||    
T  24225749 aaccaaacagaagaatcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaa 24225661  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 38583929 - 38583987
Alignment:
Q  317 acaatcaaaccgaagaatcaaaatggggagaagtgcaatcaatcacaaaaatcaaaaggg 376  Q
    |||||||| | |||||||||||  ||||||||||||||||||||| || |||||||||||    
T  38583929 acaatcaatcagaagaatcaaag-ggggagaagtgcaatcaatcagaagaatcaaaaggg 38583987  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8986864 - 8986787
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| ||| |||||||||| ||||  |||||||||||   ||| | |||||||||||| |||||||||||||||||||    
T  8986864 aaaacatactaaataatataaagttctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaatt 8986787  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 2484661 - 2484620
Alignment:
Q  265 aagaaccaatagagagaggtgcaaccaaacagaagaatcaaa 306  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  2484661 aagaaccaatagaaagaggagcaaccaaatagaagaatcaaa 2484620  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5616866 - 5616789
Alignment:
Q  1 aaaatatattaaataatatgaagtcttaacactacccg--aaggtaaagcttactaagttttaagcttgttacaaatt 76  Q
    |||| |||||||||||||| ||||  |||||||||||   ||| |||||| ||||||| ||||| |||||||||||||    
T  5616866 aaaagatattaaataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaatt 5616789  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 18984391 - 18984358
Alignment:
Q  43 taaagcttactaagttttaagcttgttacaaatt 76  Q
    |||||||||||||| |||||||||||||||||||    
T  18984391 taaagcttactaaggtttaagcttgttacaaatt 18984358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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