View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_20 (Length: 516)

Name: NF7739_low_20
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_20
NF7739_low_20
[»] chr6 (1 HSPs)
chr6 (10-500)||(33701641-33702128)
[»] chr8 (2 HSPs)
chr8 (318-404)||(6094181-6094267)
chr8 (361-407)||(10920251-10920297)
[»] scaffold0063 (1 HSPs)
scaffold0063 (318-404)||(5587-5673)
[»] chr1 (1 HSPs)
chr1 (350-404)||(21171328-21171382)
[»] scaffold0657 (1 HSPs)
scaffold0657 (359-404)||(1051-1096)
[»] chr5 (1 HSPs)
chr5 (327-404)||(17285804-17285881)
[»] chr4 (1 HSPs)
chr4 (359-404)||(26963698-26963743)
[»] chr2 (1 HSPs)
chr2 (265-294)||(19692575-19692604)
[»] chr7 (1 HSPs)
chr7 (360-404)||(12750884-12750928)


Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Original strand, 33701641 - 33702128
Alignment:
Q  10 gcatagattgtgactatagaaagagaaacgnnnnnnnnntatattgagaaagtctagtgttaaggaagatgaaaatgataaaaatgnnnnnnnagatgca 109  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  33701641 gcatagattgtgactatagaaagagaaacgaaaaaaaaaaatattgagaaagtctagtgttaaggaagatgaaaatgataaaaatgtttttt-agatgca 33701739  T
Q  110 catgaaacaatttatataacttactacgtaatattatcatggttagtcaatcttaatacttaaactcatctgaaagatctgttaactctttattatgatt 209  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||    
T  33701740 catgaaacagtttatataacttactacgtaatattatcatggttagtcaatcg-aatacttaaactcacctgaaagatttgttaactctttattatgatt 33701838  T
Q  210 cgtgaaatttaatcattggtcttgtacatatataacaatctctatgcagtataaatatctcatttcatagtaaaacttttgactatgtgttgtaccaaat 309  Q
    |||||||||||||||||| |||  |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33701839 cgtgaaatttaatcattgctctc-tacacatataacagtctttatgcagtataaatatctcatttcatagtaaaacttttgactatgggttgtaccaaat 33701937  T
Q  310 aaaacttctgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaattaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33701938 aaaacttctgactatagatacttcaaaaataatgtcattttgttcaacggaatctcacgattaaatcatatttaatgtttcattaaacggactaattaaa 33702037  T
Q  410 tccctcaagttaacagaacaagttacattagatagatttgctaataacctgatattatcatagcttgaacaattggaatacatgtcacatt 500  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33702038 tccctcaagttaacagaacaagttacattagatagacttgctaataacctgatattatcatagcttgaacaattggaatacatgtcacatt 33702128  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 6094267 - 6094181
Alignment:
Q  318 tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    |||||| |||||||| ||||||| | || || |||| ||| ||||||||| ||||| | ||| |||||||| |||||||||||||||    
T  6094267 tgactacagatactttaaaaatagtttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa 6094181  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 10920297 - 10920251
Alignment:
Q  361 gtctcacgattaaatcatatttaatgtttcattaaacggactaatta 407  Q
    ||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  10920297 gtctcacgattaactcatacttaatgttccattaaacagactaatta 10920251  T

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Target: scaffold0063 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 5673 - 5587
Alignment:
Q  318 tgactatagatacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    |||||| | |||||| || |||||| || || |||| ||| ||||||||| ||||| | ||| |||||||| |||||||||||||||    
T  5673 tgactacatatactttaagaataatttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaacggactaa 5587  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 21171328 - 21171382
Alignment:
Q  350 tgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    |||||||| ||||||||| ||||| | |||||||||||| ||| |||||||||||    
T  21171328 tgttcaacggggtctcacaattaagttatatttaatgttccatgaaacggactaa 21171382  T

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Target: scaffold0657 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 1096 - 1051
Alignment:
Q  359 gggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    ||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  1096 gggtctcacaattaagttatacttaatgtttcattaaacggactaa 1051  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 404
Target Start/End: Original strand, 17285804 - 17285881
Alignment:
Q  327 atacttcaaaaataatgtcattttgttcaacagggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    |||||| || ||||||||||||| ||| |  ||||| |||||||||| ||| | |||||||| |||||||| ||||||    
T  17285804 atactttaagaataatgtcatttagtttactagggtttcacgattaagtcacacttaatgttccattaaacagactaa 17285881  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 26963743 - 26963698
Alignment:
Q  359 gggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    ||||||||| ||||| | |||||||||||| |||||||||||||||    
T  26963743 gggtctcacaattaagttatatttaatgttccattaaacggactaa 26963698  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 19692575 - 19692604
Alignment:
Q  265 tatctcatttcatagtaaaacttttgacta 294  Q
    ||||||||||||||||||||||||||||||    
T  19692575 tatctcatttcatagtaaaacttttgacta 19692604  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 12750928 - 12750884
Alignment:
Q  360 ggtctcacgattaaatcatatttaatgtttcattaaacggactaa 404  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  12750928 ggtctcacaattaagttatacttaatgtttcattaaacggactaa 12750884  T

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