View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_21 (Length: 487)
Name: NF7739_low_21
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 52409233 - 52409689
Alignment:
| Q |
1 |
aatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgttcttatgatgttactctgtg |
100 |
Q |
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| T |
52409233 |
aatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgttcttatgatgttactctgtg |
52409332 |
T |
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| Q |
101 |
tgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggacataaagattaattgtacacaagcctaattaaggtgcaaatt |
200 |
Q |
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| T |
52409333 |
tgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggaaataaagattaattgtacacaagcctaattaaggtgcaaatt |
52409432 |
T |
|
| Q |
201 |
aactatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggctttcgaattctctgacaaga |
300 |
Q |
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| T |
52409433 |
aaatatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggctttcgaattctctgacaaga |
52409532 |
T |
|
| Q |
301 |
gaataagtgttggtgtgattaatgtaaggaaagcccaaaagacaaatgttggaattagagttctttctctcatcatcatatcacaggagattaaactata |
400 |
Q |
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| T |
52409533 |
gaataagtgttggtgtgattaatgtaaggaaagcccagaagacaaatgttggaattagagttctttctctcatcatcatatcacaggagattaaactata |
52409632 |
T |
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| Q |
401 |
acaattaatatcatgcacctcctaagtaaaggttatagtacataactttttgggggcgagggataggca |
469 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52409633 |
acaattaatatcatgcacctcctaagta------------cataactttttgggggcgagggataggca |
52409689 |
T |
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