View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_23 (Length: 476)
Name: NF7739_low_23
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 38792123 - 38791659
Alignment:
| Q |
1 |
caaatctatctccacacatattctcgcgtatttcccacttagcctatcatcaaccttcaacatcacccccaaaaagttgatcctatcctcgaaagaaaag |
100 |
Q |
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| T |
38792123 |
caaatctatctccacacatattctcgcgtatttcccacttagcctatcatcaaccttcaacatcacccccaaaaagttgatcctatcctcgaaagaaaag |
38792024 |
T |
|
| Q |
101 |
gcgggttccataggtagcttgagtattctaatccaaactaccgcaaccctatgttcgggagttagcgnnnnnnngggtcgccaacgttgtaacaagagat |
200 |
Q |
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| T |
38792023 |
gcgggttccataggtagcttgagtattctaatccaaactaccgcaaccctatgttcggcggttagcgaaaaaaagggtcgccaactttataacaagagat |
38791924 |
T |
|
| Q |
201 |
aagaatcagccaccatccaaggtccgttgtaaagggcatgattgtaatcttcttcagttgcgaacttcacagagaagaacccattttccatatctgttac |
300 |
Q |
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| T |
38791923 |
aagaatcagccaccatccaaggtccgttgtaaagggcatgattgtaatcttcttcagttgcgaacttcacagagaagaacccattttccatatctgttac |
38791824 |
T |
|
| Q |
301 |
tgtaatggttccaccattttt-gtccaagaatggtgaagcttgtgttgtagtgtttgaaaggtgagattttgttcagcaaggatttgaacaatgagcgtg |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791823 |
tgtaatggttccaccatttttggtccaagaatggtgaagcttgtgttgtagtgtttgaaaggtgagattttgttcagcaaggatttgaacaatgagcgtg |
38791724 |
T |
|
| Q |
400 |
tgtttccatgggtttgaccagtgagacatatcttcatcggtgaacggaatatcaggacctgcaac |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38791723 |
tgtttccatgggtttgaccagtgagacatatcttcatcggtgaacggaatatcaggacctgcaac |
38791659 |
T |
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