View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_24 (Length: 463)
Name: NF7739_low_24
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_24 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 33990110 - 33990538
Alignment:
| Q |
16 |
atatctgaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990110 |
atatctcaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
33990209 |
T |
|
| Q |
116 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990210 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
33990309 |
T |
|
| Q |
216 |
ttcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990310 |
ttcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaact |
33990409 |
T |
|
| Q |
316 |
tttgaacacaaattcaatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990410 |
tttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagca |
33990509 |
T |
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| Q |
416 |
agttgaaaatggagcttataagggatggt |
444 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33990510 |
agttgaaaatggagcttataagggatggt |
33990538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 36 - 432
Target Start/End: Original strand, 33950654 - 33951041
Alignment:
| Q |
36 |
agcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggat |
135 |
Q |
| |
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||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| ||||||||||||||||| ||||||||| |
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| T |
33950654 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
33950753 |
T |
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| Q |
136 |
catcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattc------ctatgttgttg |
229 |
Q |
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|| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||| |
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| T |
33950754 |
caccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttg |
33950853 |
T |
|
| Q |
230 |
atgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaatt |
329 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
33950854 |
aggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatg---------------aatt |
33950938 |
T |
|
| Q |
330 |
caatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggag |
429 |
Q |
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|||||||| | || || |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33950939 |
caatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagttgaaaatggag |
33951038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 82 - 306
Target Start/End: Original strand, 33959347 - 33959571
Alignment:
| Q |
82 |
aaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcag |
181 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || | |||| |||||||||||||||||| |
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| T |
33959347 |
aaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgcag |
33959446 |
T |
|
| Q |
182 |
aagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
33959447 |
gagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagcc |
33959546 |
T |
|
| Q |
282 |
cagagaaattcttgagcttctcaac |
306 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33959547 |
aagagaaattcttgagcttctcaac |
33959571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 33973298 - 33973573
Alignment:
| Q |
16 |
atatctgaaatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| |||||| ||||||||| ||| || || ||||| ||||||| |
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| T |
33973298 |
atatctgaaatagttgaaacagcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagc |
33973397 |
T |
|
| Q |
116 |
aatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatga |
215 |
Q |
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| ||||||||||| |||||||| |||||||||||||| || | | | ||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
33973398 |
attacaatgaacacttggatcaacccagagaagaaataaatagttt-------------gat--agaagaaagtgcatgcaaatcttcttttgagaatga |
33973482 |
T |
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| Q |
216 |
ttcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
306 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33973483 |
ttcctacgttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaac |
33973573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 432
Target Start/End: Original strand, 33973577 - 33973636
Alignment:
| Q |
373 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
432 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagctt |
33973636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 213 - 431
Target Start/End: Original strand, 10335 - 10556
Alignment:
| Q |
213 |
tgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaa |
312 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaa |
10434 |
T |
|
| Q |
313 |
acttttgaacacaaattcaatgaagctaaaccacc---tttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccat |
409 |
Q |
| |
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| ||||||||| ||||| |||||| | |||||| |||||| |||||| | |||||| ||||||||| |||||| ||||||| | |||||||||| |
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| T |
10435 |
aattttgaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccat |
10534 |
T |
|
| Q |
410 |
ttagcaagttgaaaatggagct |
431 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
10535 |
ttagcaagttgaaaatggagct |
10556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 10163 - 10283
Alignment:
| Q |
65 |
tgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctatt |
164 |
Q |
| |
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|||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| || ||||| ||||||| | || ||| | |
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| T |
10163 |
tgttgaggtcaaccttgaagggtttaactactgtggttcaagacataaagcaatacaatgaaaacatggaccaccccagcaaagaaataagcacactaat |
10262 |
T |
|
| Q |
165 |
agaagaaaatgatgcagaaga |
185 |
Q |
| |
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||||||||||| ||||||||| |
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|
| T |
10263 |
agaagaaaatgttgcagaaga |
10283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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