View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_25 (Length: 454)

Name: NF7739_low_25
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_25
NF7739_low_25
[»] chr8 (3 HSPs)
chr8 (7-209)||(10436132-10436334)
chr8 (273-447)||(10436399-10436573)
chr8 (398-447)||(36111405-36111454)
[»] chr7 (2 HSPs)
chr7 (396-447)||(45940052-45940103)
chr7 (403-447)||(41294149-41294193)
[»] scaffold0471 (1 HSPs)
scaffold0471 (398-447)||(1278-1327)
[»] chr1 (10 HSPs)
chr1 (398-447)||(2711860-2711909)
chr1 (397-447)||(34405769-34405819)
chr1 (398-447)||(34410349-34410398)
chr1 (403-447)||(17983416-17983460)
chr1 (403-447)||(34408911-34408955)
chr1 (402-447)||(25493208-25493253)
chr1 (402-442)||(2271866-2271906)
chr1 (402-442)||(31565497-31565537)
chr1 (402-447)||(2273269-2273314)
chr1 (402-447)||(5344202-5344247)
[»] chr3 (1 HSPs)
chr3 (399-447)||(43559539-43559587)
[»] chr6 (1 HSPs)
chr6 (397-447)||(5635459-5635509)
[»] chr4 (2 HSPs)
chr4 (397-447)||(45039348-45039398)
chr4 (402-447)||(25750462-25750507)
[»] chr5 (5 HSPs)
chr5 (402-447)||(8880902-8880947)
chr5 (402-447)||(13300071-13300116)
chr5 (402-447)||(13301767-13301812)
chr5 (402-447)||(32685157-32685202)
chr5 (403-447)||(5513439-5513483)
[»] chr2 (3 HSPs)
chr2 (402-447)||(5245913-5245958)
chr2 (402-447)||(27282521-27282566)
chr2 (403-447)||(43311990-43312034)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 10436132 - 10436334
Alignment:
Q  7 agtttcatctaaagttggttatctattttggctttgcaattcaaaataataattttgtactatgatgaacacagtctaaatgtgtcacataagattcaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10436132 agtttcatctaaagttggttatctattttggctttgcaattcaaaataataattttttactatgatgaacacagtctaaatgtgtcacataagattcaaa 10436231  T
Q  107 aaatattaaaatgattcttttttattgattcaagctaaatatcatttttgtgtcaaaaagctaaatatcattttctttaaaatgatttggttttaacctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10436232 aaatattaaaatgattcttttttattgattcaagctaaatatcatttttgtgtcaaaaagctaaatatcattttctttaaaatgatttgcttttaacctt 10436331  T
Q  207 tgt 209  Q
    |||    
T  10436332 tgt 10436334  T

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Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 273 - 447
Target Start/End: Original strand, 10436399 - 10436573
Alignment:
Q  273 ccaatgaacattgagtctagtagaaagagctaaactcccacaacatgacgaattaaagttcaaattttggctgaaagaagtatctatatttaatgtctaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10436399 ccaatgaacattgagtctagtagaaagagctaaactcccacaacatgacgaattaaagttcaaattttggctgaaagaagtatctatatttaatgtccaa 10436498  T
Q  373 gatgtctaaaataagatcacatacacaattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
      ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10436499 cttgtctaaaataagattacattcacaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 10436573  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 36111405 - 36111454
Alignment:
Q  398 caattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36111405 caattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 36111454  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 447
Target Start/End: Complemental strand, 45940103 - 45940052
Alignment:
Q  396 cacaattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45940103 cacaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 45940052  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 41294149 - 41294193
Alignment:
Q  403 ggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  41294149 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 41294193  T

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Target: scaffold0471 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 1278 - 1327
Alignment:
Q  398 caattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1278 caattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 1327  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 2711909 - 2711860
Alignment:
Q  398 caattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2711909 caattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 2711860  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 34405769 - 34405819
Alignment:
Q  397 acaattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34405769 acaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 34405819  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 34410349 - 34410398
Alignment:
Q  398 caattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  34410349 caattggcccattagctcagttggttagagtgtcgtgctaataacgcgaa 34410398  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 17983460 - 17983416
Alignment:
Q  403 ggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  17983460 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 17983416  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 34408911 - 34408955
Alignment:
Q  403 ggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  34408911 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 34408955  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 25493208 - 25493253
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  25493208 tggcctattagctcagttggttagagcgtcgtgctaataacgcgaa 25493253  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 2271866 - 2271906
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataac 442  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  2271866 tggcccattagctcagttggttagagcgttgtgctaataac 2271906  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 31565537 - 31565497
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataac 442  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31565537 tggcccattagcttagttggttagagcgtcgtgctaataac 31565497  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 2273269 - 2273314
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||    
T  2273269 tggcccattagctcagttggttagagtgttgtgctaataacgcgaa 2273314  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 5344202 - 5344247
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||| || ||| ||||||||||||||||||||||| ||||    
T  5344202 tggcccattaacttagtgggttagagcgtcgtgctaataacgcgaa 5344247  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 43559539 - 43559587
Alignment:
Q  399 aattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43559539 aattggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 43559587  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 5635509 - 5635459
Alignment:
Q  397 acaattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5635509 acaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 5635459  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 45039348 - 45039398
Alignment:
Q  397 acaattggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  45039348 acaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 45039398  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 25750462 - 25750507
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  25750462 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 25750507  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 8880947 - 8880902
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  8880947 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 8880902  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 13300116 - 13300071
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13300116 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 13300071  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 13301812 - 13301767
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13301812 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 13301767  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 32685202 - 32685157
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  32685202 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 32685157  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 5513483 - 5513439
Alignment:
Q  403 ggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  5513483 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 5513439  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 5245913 - 5245958
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  5245913 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 5245958  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 27282521 - 27282566
Alignment:
Q  402 tggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27282521 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 27282566  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 43312034 - 43311990
Alignment:
Q  403 ggcccattagctcagttggttagagcgtcgtgctaataacacgaa 447  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  43312034 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaa 43311990  T

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