View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_3 (Length: 811)
Name: NF7739_low_3
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_3 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 10 - 793
Target Start/End: Original strand, 29974657 - 29975442
Alignment:
| Q |
10 |
agtagcagagataaatgttggatttggattttgttcatcacttgggtggtagcttgatcaatgtctagaaacgtatttagcatgtccttatttgtgtcaa |
109 |
Q |
| |
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|||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29974657 |
agtaccagagataaatgttggatttgggtttttttcatcacttgggtggtagcttgatcaatgtctagaaacgtatttggcatgtccttatttgtgtcaa |
29974756 |
T |
|
| Q |
110 |
aacctttgacttccctcaacttcaaccgttgatcaaccaaacgttcgaagatatcaaggatcttgccaacataaacagatgtacgacccttaataccttg |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
29974757 |
aacctttgacttccctcaacttcaaccgttgatcaaccgaacgttcgaagatatcagggatcttgccagcataaacggatttacgacccttaataccttg |
29974856 |
T |
|
| Q |
210 |
tgggtcaaacatcctaagtgcaggaaaaagatcagcaatgtttggttttccacattcttccattatattcacaactaactccttgaaatcaccaactgaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29974857 |
tgggtcaaacatcctaagtgcaggaaaaagatcagcaatgttgggttttccacattcttccattatattcacaactaactccttgaaatcaccgactgaa |
29974956 |
T |
|
| Q |
310 |
ccagaagaatcaaccaaatcaatagagaaaatagtgtttgacaacaaattgattgatgtcttaaaagccatatttccaatatcaacagcttcattaataa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29974957 |
ccagaagaatcaaccaaatcaatagagaaaatagtgtttgacaacaaattgattgatgtcttaaaagccatatttccaatatcaacagcttcattaataa |
29975056 |
T |
|
| Q |
410 |
gacaactttgattaatatcattgatgaattcttgcag--tttttgactcctaattcccttactctcctcaagagtcttgttagagagtaattgactattg |
507 |
Q |
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| T |
29975057 |
gacaactttgattaatatcattgatgaattcttgcagtttttttgactcctaattcccttactctcctcaagagtcttgttagagagtaattgactattg |
29975156 |
T |
|
| Q |
508 |
cctatttttcttaagtctctccaaagaggtgaaacaggtaagaaggtcatgctatatttgtggtggtcatgaacttgcacagcattgggaatggctttat |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29975157 |
cctatttttcttaagtctctccaaagaggtgaaacaggtaagaatgtcatgctatatttgtggtggtcatgaatttgcacagcattgggaatggctttat |
29975256 |
T |
|
| Q |
608 |
ttgataagaattgatcatgggtttggagtatttctttggccattttaggtgaagagacaactatggtggttatttgacctagctttagactcatgatagg |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
29975257 |
ttgataagaattgatcatgggtttggagtatttctttggccattttaggtgaagagacaactatggtggttatttgacctagttttagactcatgattgg |
29975356 |
T |
|
| Q |
708 |
gccataaatttcagctaatttggctaaggatttgtgaggttttttccctaattgaaggaggtttcctatgaagggaagaggagtag |
793 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29975357 |
tccataaatttcagctaatttggctaaggatttgtgaggttttttccctaattgaaggaggtttcctatgaagggaagaggagtag |
29975442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 788
Target Start/End: Original strand, 3013 - 3159
Alignment:
| Q |
642 |
tttggccattttaggtgaagagacaactatggtggttatttgacctagctttagactcatgatagggccataaatttcagctaatttggctaaggatttg |
741 |
Q |
| |
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|||||||||| | | |||||||| ||| | ||||||||||| |||||||| |||||||| | ||| ||||| |||| || | ||| || || |||||| |
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| T |
3013 |
tttggccattgttgatgaagagataacaacagtggttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttg |
3112 |
T |
|
| Q |
742 |
tgaggttttttccctaattgaaggaggtttcctatgaagggaagagg |
788 |
Q |
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|| || |||| ||||||| ||||||||| ||||||| ||||||||| |
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| T |
3113 |
tggggcttttgtcctaattcaaggaggttccctatgatgggaagagg |
3159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 788
Target Start/End: Original strand, 11107574 - 11107720
Alignment:
| Q |
642 |
tttggccattttaggtgaagagacaactatggtggttatttgacctagctttagactcatgatagggccataaatttcagctaatttggctaaggatttg |
741 |
Q |
| |
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|||||||||| | | |||||||| ||| | ||||||||||| |||||||| |||||||| | ||| ||||| |||| || | ||| || || |||||| |
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| T |
11107574 |
tttggccattgttgatgaagagataacaacagtggttatttgccctagcttgagactcattaaaggaccatatattttggcaagtttagccaatgatttg |
11107673 |
T |
|
| Q |
742 |
tgaggttttttccctaattgaaggaggtttcctatgaagggaagagg |
788 |
Q |
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|| || |||| ||||||| ||||||||| ||||||| ||||||||| |
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| T |
11107674 |
tggggcttttgtcctaattcaaggaggttccctatgatgggaagagg |
11107720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 788
Target Start/End: Complemental strand, 46933264 - 46933203
Alignment:
| Q |
727 |
ttggctaaggatttgtgaggttttttccctaattgaaggaggtttcctatgaagggaagagg |
788 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||| |
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| T |
46933264 |
ttggctaaggatttgtgaggtttttctcctaattcaaggaggttccctatgattggaagagg |
46933203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 788
Target Start/End: Complemental strand, 46926486 - 46926338
Alignment:
| Q |
640 |
tctttggccattttaggtgaagagacaactatggtggttatttgacctagctttagactcatgatagggccataaatttcagctaatttggctaaggatt |
739 |
Q |
| |
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||||| |||||| | | ||| |||| ||| || ||||||||||| || | ||| |||||||| | |||||||| ||||| |||| ||||| || || | |
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| T |
46926486 |
tctttagccattgttgctgaggagataacaatagtggttatttggccaaacttgagactcattaaagggccatgaattttcgctagcttggccaatgact |
46926387 |
T |
|
| Q |
740 |
tgtgaggttttttccctaattgaaggaggtttcctatgaagggaagagg |
788 |
Q |
| |
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|||||||||||| ||||||| ||||||||| ||||||| |||||||| |
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| T |
46926386 |
tgtgaggtttttctcctaattcaaggaggttccctatgattggaagagg |
46926338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 694
Target Start/End: Complemental strand, 1363502 - 1363429
Alignment:
| Q |
621 |
atcatgggtttggagtatttctttggccattttaggtgaagagacaactatggtggttatttgacctagcttta |
694 |
Q |
| |
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|||||| ||||||||||| ||||||||||| | || ||||||| ||||||||| |||| |||||||||||||| |
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| T |
1363502 |
atcatgtgtttggagtatctctttggccatgtcgggcgaagagataactatggttgttacttgacctagcttta |
1363429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 694
Target Start/End: Original strand, 1407922 - 1407995
Alignment:
| Q |
621 |
atcatgggtttggagtatttctttggccattttaggtgaagagacaactatggtggttatttgacctagcttta |
694 |
Q |
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|||||| ||||||||||| ||||||||||| | || ||||||| ||||||||| |||| |||||||||||||| |
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| T |
1407922 |
atcatgtgtttggagtatctctttggccatgtcgggcgaagagataactatggttgttacttgacctagcttta |
1407995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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