View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_33 (Length: 427)

Name: NF7739_low_33
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_33
NF7739_low_33
[»] chr8 (20 HSPs)
chr8 (1-410)||(4825951-4826346)
chr8 (211-407)||(4887052-4887248)
chr8 (253-406)||(4729368-4729520)
chr8 (253-404)||(4740122-4740272)
chr8 (279-410)||(4919483-4919614)
chr8 (293-406)||(4692402-4692515)
chr8 (293-411)||(4790978-4791096)
chr8 (253-406)||(4753230-4753382)
chr8 (264-404)||(4801277-4801416)
chr8 (295-411)||(4773119-4773235)
chr8 (293-404)||(4846608-4846719)
chr8 (295-405)||(4909919-4910029)
chr8 (293-407)||(10450677-10450791)
chr8 (293-407)||(10455103-10455217)
chr8 (293-404)||(4719295-4719406)
chr8 (295-407)||(4897673-4897785)
chr8 (295-407)||(21436553-21436665)
chr8 (304-391)||(4684432-4684519)
chr8 (293-404)||(4709113-4709224)
chr8 (294-407)||(4869999-4870112)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 4825951 - 4826346
Alignment:
Q  1 taaacgaatcttttgttagaaagaataagaagcacaagggtttatttatctaaactattttgcagcaatattacatctaatctacatatatagtaaacta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| |||||||    
T  4825951 taaacaaatcttttgttagaaagaataagaagcacaagggtttatttatctaaactattttgcagcaatattacatctaatcta----tataataaacta 4826046  T
Q  101 atatatgtcaaaagctacaacaaaataaaataaattagtaatgtaacttttttcacataattttcatgtaatttgatctttgaaatctttgtacaataaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      
T  4826047 gtatatgtcaaaagctacaacaaaataaaataaattagtaatgtaacttttttcacataattttcatgtaatttgatcattgaaatctttgtacaata-- 4826144  T
Q  201 ttcatatacaactgcttgaaatgaataattttgcaaagtaaatagaataaacatattgaaatatggttaatataatttgatttttcattttaacacttac 300  Q
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4826145 --------caactgcttgaaatgaatatttttgcaaagtaaatagaataaacatattgaaatatggttaatataatttgatttttcattttaacacttac 4826236  T
Q  301 tcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagatatcttgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4826237 tcaggatcagcgtaaccaagtgtaccggcagggccagtggatatatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagatatcttgg 4826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 407
Target Start/End: Original strand, 4887052 - 4887248
Alignment:
Q  211 actgcttgaaatgaataattttgcaaagtaaatagaataaacatattgaaatatggttaatataatttgatttttcattttaacacttactcaggatcag 310  Q
    ||||||||||||||||| || |||| ||||||||  | |||  |||||||||   ||| ||  |||||||  ||| || ||| ||||||||| ||||||     
T  4887052 actgcttgaaatgaatatttatgcagagtaaatattaaaaaactattgaaattcagtttatcaaatttgacattttatattagcacttactctggatcaa 4887151  T
Q  311 cgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagatatcttggcatgcat 407  Q
     |||||||| |||||| |||||||  ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  4887152 tgtaaccaaatgtaccagcagggcgtgtggatatatgagaatcaacatcgttaccaaaagctctacttagcccaaaatcagaaatcttggcatgcat 4887248  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 406
Target Start/End: Complemental strand, 4729520 - 4729368
Alignment:
Q  253 atattgaaatatggttaatataatttgatttttcattttaacacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaat 352  Q
    ||||| ||||||||| |||  |||||||||||| || ||| |||||||   |||||||||||||||| |||||| ||| ||| ||| |||| ||||||||    
T  4729520 atattaaaatatggtcaatccaatttgattttttatatta-cacttacattggatcagcgtaaccaaatgtaccagcaaggcgagtagatatatgagaat 4729422  T
Q  353 caacatcgttaccaaaagctctgcttagaccaaaatcagatatcttggcatgca 406  Q
    || ||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  4729421 catcatcgttaccaaaagctctacttagaccaaaatcagaaatctttgcatgca 4729368  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 4740272 - 4740122
Alignment:
Q  253 atattgaaatatggttaatataatttgatttttcattttaacacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaat 352  Q
    ||||| ||||||||| ||| ||||||||||||| || ||| ||||||| | |||||||||||||||| |||||| |||||||  || |||| ||||||||    
T  4740272 atattaaaatatggtcaatctaatttgattttttatatta-cacttacactggatcagcgtaaccaaatgtaccagcagggcgtgtcgatatatgagaat 4740174  T
Q  353 caacatcgttaccaaaagctctgcttagaccaaaatcagatatcttggcatg 404  Q
    ||  |||||||||||||||||| ||||||||||||||||  ||||| |||||    
T  4740173 cattatcgttaccaaaagctctacttagaccaaaatcagcaatctttgcatg 4740122  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 410
Target Start/End: Original strand, 4919483 - 4919614
Alignment:
Q  279 gatttttcattttaacacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgctt 378  Q
    ||||||| || ||| |||||||||||||||||| |||||||||||||| |||||||  |||  ||  |||||||||| ||||||| |||||||||| |||    
T  4919483 gattttttatattagcacttactcaggatcagcataaccaagtgtaccagcagggcgcgtgagtatttgagaatcaatatcgttatcaaaagctctactt 4919582  T
Q  379 agaccaaaatcagatatcttggcatgcatgtt 410  Q
    |||||||||||||  |||||||||||||||||    
T  4919583 agaccaaaatcagcaatcttggcatgcatgtt 4919614  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 4692515 - 4692402
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    |||||||||| |||||||||||||||| |||||| |||||||  |||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||     
T  4692515 acacttactctggatcagcgtaaccaattgtaccagcagggcgtgtggatacatgagagtcatcgtcgttaccaaaagctctacttagaccaaaatcagc 4692416  T
Q  393 tatcttggcatgca 406  Q
     ||||| |||||||    
T  4692415 aatctttgcatgca 4692402  T

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Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 411
Target Start/End: Original strand, 4790978 - 4791096
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    ||||||||||||||||||||||||||| |||||| ||||| |  ||||||| ||||||| || |||| |||||||||||||| ||||||||||||||||     
T  4790978 acacttactcaggatcagcgtaaccaaatgtaccagcaggtcgtgtggatatatgagaagcatcatcattaccaaaagctctacttagaccaaaatcagc 4791077  T
Q  393 tatcttggcatgcatgttt 411  Q
     ||||| ||||||| ||||    
T  4791078 aatctttgcatgcaagttt 4791096  T

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Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 406
Target Start/End: Complemental strand, 4753382 - 4753230
Alignment:
Q  253 atattgaaatatggttaatataatttgatttttcattttaacacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaat 352  Q
    ||||| ||||| ||| ||| ||||||||||||| ||  || ||||| | | |||||||||||||||| |||||| |||||||  || |||| ||||||||    
T  4753382 atattaaaatacggtcaatctaatttgattttttataata-cacttgcactggatcagcgtaaccaaatgtaccagcagggcgtgtagatatatgagaat 4753284  T
Q  353 caacatcgttaccaaaagctctgcttagaccaaaatcagatatcttggcatgca 406  Q
    || ||||||||||||||||||| ||||||||||||||||  ||||| |||||||    
T  4753283 catcatcgttaccaaaagctctacttagaccaaaatcagcaatctttgcatgca 4753230  T

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Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 404
Target Start/End: Original strand, 4801277 - 4801416
Alignment:
Q  264 tggttaatataatttgatttttcattttaacacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgtta 363  Q
    |||||||| ||||||||||||| || |||  |||||||  |||||| ||||||||| |||||| |||||||  || |||| |||||||||| |||| |||    
T  4801277 tggttaatctaatttgattttttatattag-acttactgtggatcaacgtaaccaaatgtaccagcagggcgcgtagatatatgagaatcatcatcttta 4801375  T
Q  364 ccaaaagctctgcttagaccaaaatcagatatcttggcatg 404  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  4801376 ccaaaagctctacttagaccaaaatcagcaatcttggcatg 4801416  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 411
Target Start/End: Original strand, 4773119 - 4773235
Alignment:
Q  295 acttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagata 394  Q
    |||||||  |||||| | ||||||| |||||| |||||||  ||||||| ||||||||||| ||||||| |||||||||| || |||||||||||||  |    
T  4773119 acttactttggatcaacataaccaaatgtaccagcagggcgtgtggatatatgagaatcaatatcgttatcaaaagctctactcagaccaaaatcagcaa 4773218  T
Q  395 tcttggcatgcatgttt 411  Q
    |||||||||||||||||    
T  4773219 tcttggcatgcatgttt 4773235  T

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Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 4846608 - 4846719
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    |||||||||  |||||| ||||||||| |||||| |||||||  ||||||| ||||||||||  ||| |||||||||||||| ||||||||||||||||     
T  4846608 acacttactgtggatcaacgtaaccaaatgtaccagcagggcgcgtggatatatgagaatcattatcattaccaaaagctctacttagaccaaaatcagc 4846707  T
Q  393 tatcttggcatg 404  Q
     |||||||||||    
T  4846708 aatcttggcatg 4846719  T

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Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 4909919 - 4910029
Alignment:
Q  295 acttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagata 394  Q
    |||||| |||||||| | ||||| ||||| || ||||| |  ||||||| ||||||||||| |||||||||||||||||||||||| || ||||||| ||    
T  4909919 acttacgcaggatcaacataacctagtgtgccagcaggtcgggtggatatatgagaatcaatatcgttaccaaaagctctgcttaggccgaaatcagcta 4910018  T
Q  395 tcttggcatgc 405  Q
    |||||||||||    
T  4910019 tcttggcatgc 4910029  T

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Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 10450791 - 10450677
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    ||||||||| |||||||   |||||  ||||||| ||||| |  ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||     
T  10450791 acacttacttaggatcaatataacctggtgtaccagcaggtcgggtggatatatgagaatcaatatcgttaccaaaagctctacttaggccaaaatcagc 10450692  T
Q  393 tatcttggcatgcat 407  Q
    |||||||||||||||    
T  10450691 tatcttggcatgcat 10450677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 10455217 - 10455103
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    ||||||||| |||||||   |||||  ||||||| ||||| |  ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||     
T  10455217 acacttacttaggatcaatataacctggtgtaccagcaggtcgggtggatatatgagaatcaatatcgttaccaaaagctctacttaggccaaaatcagc 10455118  T
Q  393 tatcttggcatgcat 407  Q
    |||||||||||||||    
T  10455117 tatcttggcatgcat 10455103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 4719406 - 4719295
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    |||||||||| |||||| ||||||||| ||||||  ||||||  ||||||| |||||||||| | ||||||||||||||||| |||| |||||||||||     
T  4719406 acacttactctggatcaacgtaaccaaatgtaccaccagggcgtgtggatatatgagaatcatcgtcgttaccaaaagctctacttaaaccaaaatcagc 4719307  T
Q  393 tatcttggcatg 404  Q
     ||||| |||||    
T  4719306 aatctttgcatg 4719295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 4897673 - 4897785
Alignment:
Q  295 acttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagata 394  Q
    |||||| |||||||| | ||||| ||||| || |||||    ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||  |    
T  4897673 acttacgcaggatcaacataacctagtgtgccagcaggttgggtggatatatgagaatcaatatcgttaccaaaagctctacttaggccaaaatcagcga 4897772  T
Q  395 tcttggcatgcat 407  Q
    |||||||||||||    
T  4897773 tcttggcatgcat 4897785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 407
Target Start/End: Original strand, 21436553 - 21436665
Alignment:
Q  295 acttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagata 394  Q
    |||||| |||||||| | ||||| |||||||| |||||   ||| |||| ||||||||||| ||||||||| |||||||| ||||| |||||||||| ||    
T  21436553 acttacgcaggatcaacataacctagtgtaccagcaggttgagtcgatatatgagaatcaatatcgttaccgaaagctctacttaggccaaaatcagcta 21436652  T
Q  395 tcttggcatgcat 407  Q
    ||||||| |||||    
T  21436653 tcttggcttgcat 21436665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 4684519 - 4684432
Alignment:
Q  304 ggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcag 391  Q
    |||||| |||| |||| |||||| |||||||  ||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||    
T  4684519 ggatcaacgtagccaaatgtaccagcagggcgtgtggatatatgagaatcatcatcgttaccaaaagctttacttagaccaaaatcag 4684432  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 4709224 - 4709113
Alignment:
Q  293 acacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcaga 392  Q
    |||||||||| |||||| | | ||||| |||||| |||||||  ||||||| ||||||||||  |||||||  ||||||||||||||||||||||||||     
T  4709224 acacttactctggatcaacatgaccaaatgtaccagcagggcgtgtggatatatgagaatcattatcgttaataaaagctctgcttagaccaaaatcagc 4709125  T
Q  393 tatcttggcatg 404  Q
     ||||| |||||    
T  4709124 aatctttgcatg 4709113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 4869999 - 4870112
Alignment:
Q  294 cacttactcaggatcagcgtaaccaagtgtaccggcagggccagtggatacatgagaatcaacatcgttaccaaaagctctgcttagaccaaaatcagat 393  Q
    ||||||||||||||||   |||||   |||||| ||||| | |||||||| ||||||||||||||||||| |||||||||| ||||  |||||||||| |    
T  4869999 cacttactcaggatcaatataacctcttgtaccagcaggacgagtggatatatgagaatcaacatcgttagcaaaagctctacttaagccaaaatcagct 4870098  T
Q  394 atcttggcatgcat 407  Q
    || ||||| |||||    
T  4870099 attttggcctgcat 4870112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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