View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_36 (Length: 423)
Name: NF7739_low_36
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 18905694 - 18905255
Alignment:
| Q |
1 |
tctattccaaactaaaacaccaaaatacatgtgctatatgacagggnnnnnnnnctcccagacagcatgtgctactcaaaacaagcgtaacacagctgct |
100 |
Q |
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| T |
18905694 |
tctattccaaactaaaacaccaaaatacaggcgctatatgacagggaaaaaaa-ctccctgacaacagctgctactcaaaacaagcgcaacacagctgct |
18905596 |
T |
|
| Q |
101 |
gcaaaaatcagaaacgccccaacagtttaaattggcagcacataggtccttccaaagaaactgtcaaaaacgccccaacgccattcggcccctgtaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18905595 |
gcaaaaatcagaaacgccccaacagtttaaactagcagcatagaggtccttccaaagaaactgtcaaaaacgccccaacgccactcggcccctgtaagaa |
18905496 |
T |
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| Q |
201 |
tcaaaatattgttattgacaaagtaataaaattcg----------------------aaaatcgctattgcatacaaggattcttggagcgctggatccg |
278 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
18905495 |
tcaaaatattgttgttgacaaagtaataaaatccgaaaatctcaaaggaggattccgaaaatcgctactgcatacaaggattcttggagcgctgggtccg |
18905396 |
T |
|
| Q |
279 |
agagagctatggcagatccagattcggatctaattcatattcggaatgatgaattttgatgaagattcagttcatgatgaaggttcacgcataaaaattc |
378 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
18905395 |
agagagctatggcatatccagattcggatctaattcagattcgaaatgatggagtttgatgaagattcagttcttgatgaaggttcacgcataaaatttc |
18905296 |
T |
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| Q |
379 |
ttcaatccagatttcgaatcaaacctgtatggtcgagagag |
419 |
Q |
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| T |
18905295 |
ttcaatccatattttgaatcaaatctgtatgggcgagagag |
18905255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 302 - 418
Target Start/End: Original strand, 11938365 - 11938481
Alignment:
| Q |
302 |
tcggatctaattcatattcggaatgatgaattttgatgaagattcagttcatgatgaaggttcacgcataaaaattcttcaatccagatttcgaatcaaa |
401 |
Q |
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| T |
11938365 |
tcggatccaatccagatacggaatgatggattttgatgaagattcagttcttgatgaaggttcacgcgtacaaattcttcaatccatattttgaatcaaa |
11938464 |
T |
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| Q |
402 |
cctgtatggtcgagaga |
418 |
Q |
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| T |
11938465 |
cttgtatggacgagaga |
11938481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 149 - 416
Target Start/End: Complemental strand, 43900117 - 43899845
Alignment:
| Q |
149 |
cttccaaagaaactgtcaaaaacgccccaacgccattcggcccctgtaagaatcaaaatattgttattgacaaagtaataaaattcg------------- |
235 |
Q |
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| T |
43900117 |
cttccaaagaaactgtcaaaaatgccccaacgccactcggcccttgtaagaatcaaaatattgttgttgacaaagtaataaaatccgaaaatctcaaagg |
43900018 |
T |
|
| Q |
236 |
---------aaaatcgctattgcatacaaggattcttggagcgctggatccgagagagctatggcagatccagattcggatctaattcatattcggaatg |
326 |
Q |
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| T |
43900017 |
aggattccgaaaatcgctactgcatacaaggattcttggagcgctggatccgagagagctatggcagatccag-----------------attcgaaatg |
43899935 |
T |
|
| Q |
327 |
atgaattttgatgaagattcagttcatgatgaaggttcacgcataaaaattcttcaatccagatttcgaatcaaacctgtatggtcgaga |
416 |
Q |
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| T |
43899934 |
atggattttgataaagattcagttcttgatgaaggtttacgcataaaaattcttcaatccagattttgaatcaaacctgtatgggcgaga |
43899845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 43900231 - 43900117
Alignment:
| Q |
2 |
ctattccaaactaaaacaccaaaatacatgtgctatatgacagggnnnnnnnn-ctcccagacagcatgtgctactcaaaacaagcgtaacacagctgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
43900231 |
ctattccaaactaaaacaccaaaatacaagcgctatatgacaggggaataataactcccagatagcagctgctactcaaaacaagcgcaacacagctgct |
43900132 |
T |
|
| Q |
101 |
gcaaaaatcagaaac |
115 |
Q |
| |
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||||||| |||||| |
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| T |
43900131 |
acaaaaattagaaac |
43900117 |
T |
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