View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_38 (Length: 407)

Name: NF7739_low_38

Description: NF7739

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7739_low_38

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 84; E-Value: 8e-40

Query Start/End: Original strand, 305 - 396

Target Start/End: Complemental strand, 31835755 - 31835664

Alignment:

Q	305	aaggaaggacaattcaaggttcacaatgtacagcagctttaatgttatatctaggatagtaggattacattttgaatcttcagttcttctca	396	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	31835755	aaggaaggacaatacaaggttcacaatgtacagcagctttaatgttatatctaggatagtaggattacattttgaatcttctgttcttctca	31835664	T

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Target: chr7; HSP #2

Raw Score: 75; E-Value: 2e-34

Query Start/End: Original strand, 20 - 131

Target Start/End: Complemental strand, 31836135 - 31836008

Alignment:

Q	20	ggtgtttcattggtaattagttacaaaggaaatgatgaaagtcaagtcaagtgtggtatacta----------------ggattggatgagtgtagtttt	103	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31836135	ggtgtttcattggtaattagttacaaaggaaatgatgaaagtcaagtcaagtgtggtatactaagatattgttagacagggattggatgagtgtagtttt	31836036	T

Q	104	atctgttcttatgagaagctgaccagga	131	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31836035	atctgttcttatgagaagctgaccagga	31836008	T

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