View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_39 (Length: 403)
Name: NF7739_low_39
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 43012730 - 43012499
Alignment:
| Q |
135 |
attttacttagctttcgatcgaacttaagattgtcaaagttatttgcagaaaatctaatagctaaaatnnnnnnn-gaccatgatgcaattattattttt |
233 |
Q |
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| T |
43012730 |
attttacttagctttcgatcgaacttaagattgtcaaagttatttgcagagaatctaatagctaaaataaaaaaaagaccatgatgcaattattattttt |
43012631 |
T |
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| Q |
234 |
tgctnnnnnnnngtttaggggtgaagatccacatatttaaaaagcaattacaaatgcatttaatttatcttcatccaaaaacactaacaagattggaaat |
333 |
Q |
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| T |
43012630 |
tgctaaaaaaaagtttagggg-gaagatccacatatttaaaaagcaattacaaatgcatttaatttatcttcatccaaaaacactaacaagattggaaat |
43012532 |
T |
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| Q |
334 |
ttggctttctcaagtgaagatatgaaataaaat |
366 |
Q |
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| T |
43012531 |
ttggctttctcaagtgaagatatgaaataaaat |
43012499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 43013382 - 43013248
Alignment:
| Q |
9 |
atcaaagaccatcatacttcaaagttcaatcaagttaatgaattcaagttgttatgagttttaattaatgataaattattgaagagaatttaaactcaat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
43013382 |
atcaaagaccatcatacttcaaagttcaatcaagttaatgaattcaagttgttatgagttttaattaatgatatattgttgaagagaatttaaactcaat |
43013283 |
T |
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| Q |
109 |
acatggttgaaataattctctactaaattttactt |
143 |
Q |
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| T |
43013282 |
gcatggttgaaataattctctactaaattttactt |
43013248 |
T |
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