View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_4 (Length: 803)

Name: NF7739_low_4
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_4
NF7739_low_4
[»] chr6 (1 HSPs)
chr6 (15-785)||(31523419-31524189)
[»] chr8 (20 HSPs)
chr8 (570-785)||(5316630-5316845)
chr8 (570-785)||(5279250-5279465)
chr8 (570-781)||(5309982-5310193)
chr8 (17-171)||(5316220-5316374)
chr8 (570-785)||(14946251-14946466)
chr8 (570-785)||(5286977-5287192)
chr8 (572-785)||(15128616-15128829)
chr8 (22-178)||(5279743-5279899)
chr8 (19-171)||(5287453-5287605)
chr8 (22-173)||(15128125-15128276)
chr8 (22-177)||(14946757-14946912)
chr8 (17-175)||(5309546-5309704)
chr8 (574-781)||(5347939-5348146)
chr8 (252-348)||(15128381-15128477)
chr8 (252-330)||(5279577-5279655)
chr8 (248-330)||(5316437-5316519)
chr8 (229-322)||(14946588-14946681)
chr8 (263-330)||(5309804-5309871)
chr8 (248-330)||(5287309-5287391)
chr8 (19-107)||(5348560-5348648)
[»] chr7 (1 HSPs)
chr7 (464-517)||(38957321-38957375)
[»] chr4 (2 HSPs)
chr4 (467-501)||(683081-683115)
chr4 (392-430)||(19262983-19263021)
[»] chr3 (1 HSPs)
chr3 (464-513)||(38612911-38612960)


Alignment Details
Target: chr6 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 15 - 785
Target Start/End: Complemental strand, 31524189 - 31523419
Alignment:
Q  15 tatcatagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31524189 tatcatagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcatt 31524090  T
Q  115 aggacaaaccttgaccctttaggcctatactcagataatgaaatatggaaggtgaatgaactagatcaacatcacagaaaaatatatgtacctacataca 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31524089 aggacaaaccttgaccctttaggcctatacacagataatgaaatatggaaggtgaatgaactagatcaacatcacagaaaaatatatgtacctacataca 31523990  T
Q  215 aaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggact 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523989 aaatgtatttgaattttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggact 31523890  T
Q  315 cttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatctatgaagcacaaacacagac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523889 cttctggttagtctttggcaacaatctgttgcatgcatgcaacgttactctttcaacgttaaggaaaatatataatcatctatgaagcacaaacacagac 31523790  T
Q  415 accggacacgacactggcacataaacactgatnnnnnnnnnnnnnnnttaattaattgaatgtaatcacttgtgtcgtgtcggacaccaaacacgccttc 514  Q
    ||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523789 accggacacgacactggcacataaacactgataaaaaatttaaaaaattaattaattgaatgtaatcacttgtgtcgtgtcggacaccaaacacgccttc 31523690  T
Q  515 catcagagggttttgcaaccaataagcccttcattgaaatctaattttgacatcatttgcagtgagtgatgaaggtggaaattggagcttagggcagcgc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523689 catcagagggttttgcaaccaataagcccttcattgaaatctaattttgacatcatttgcagtgagtgatgaaggtggaaattggagcttagggcagcgc 31523590  T
Q  615 caactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattgactctgccacagatgccattctac 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523589 caactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattgactctgccacagatgccattctac 31523490  T
Q  715 aaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaata 785  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523489 aaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaata 31523419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 1e-77; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 570 - 785
Target Start/End: Original strand, 5316630 - 5316845
Alignment:
Q  570 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 669  Q
    ||||||||||||||||||||||||||||||||||| || ||  | ||| ||||||||||||||||||| ||||| ||||||||||  ||| ||||||| |    
T  5316630 tttgcagtgagtgatgaaggtggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctgg 5316729  T
Q  670 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 769  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||||    
T  5316730 atgaagctactgcctccattgactctgccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctcacag 5316829  T
Q  770 aattccaactgtaata 785  Q
    ||||||||||||||||    
T  5316830 aattccaactgtaata 5316845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 570 - 785
Target Start/End: Complemental strand, 5279465 - 5279250
Alignment:
Q  570 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 669  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| || || || | |||| | |||||||    
T  5279465 tttgcagtgagtgatgaaggtggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctag 5279366  T
Q  670 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 769  Q
    ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||| || |||||  | ||||||||    
T  5279365 atgaagcaacagcatccattgactcagccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctcacag 5279266  T
Q  770 aattccaactgtaata 785  Q
    | ||||||||||||||    
T  5279265 agttccaactgtaata 5279250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 570 - 781
Target Start/End: Original strand, 5309982 - 5310193
Alignment:
Q  570 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 669  Q
    |||||||||||||||||||||||||||||||||||  | ||  | ||| ||||||||||||||||||| ||||| ||||| ||||||||| | ||||| |    
T  5309982 tttgcagtgagtgatgaaggtggaaattggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttctgg 5310081  T
Q  670 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 769  Q
    |||||||||| ||||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||  | ||||||||    
T  5310082 atgaagctactgcctctattgactcttccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctcacag 5310181  T
Q  770 aattccaactgt 781  Q
    | ||||||||||    
T  5310182 agttccaactgt 5310193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 5316220 - 5316374
Alignment:
Q  17 tcatagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattag 116  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5316220 tcatagatgggataaacatatgctcaatcgggttgaaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattag 5316319  T
Q  117 gacaaaccttgaccctttaggcctatactcagataatgaaatatggaaggtgaat 171  Q
    ||||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||    
T  5316320 gacaaacctcgaccctctaggcctgtactcagatgatgaaatatggaaggtgaat 5316374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 570 - 785
Target Start/End: Complemental strand, 14946466 - 14946251
Alignment:
Q  570 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 669  Q
    ||||||||||||||||||||||||||||||||||| || || |||||| ||||||| || |||||||| ||||| ||||||||||||||| | ||| | |    
T  14946466 tttgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttttgg 14946367  T
Q  670 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 769  Q
    | |||||||| || |||||||| || |||||||||||||||||||||||| |||| |||||||| |||| ||||||||| || |||||  ||||||||||    
T  14946366 acgaagctactgcatccattgattcagccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctcacag 14946267  T
Q  770 aattccaactgtaata 785  Q
    | ||||||||||||||    
T  14946266 agttccaactgtaata 14946251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 570 - 785
Target Start/End: Complemental strand, 5287192 - 5286977
Alignment:
Q  570 tttgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctag 669  Q
    ||||||||||| ||||||||||||||||||||||| || ||  | ||| ||||||| ||||||||||| ||||| ||||| |||| |||| | ||||| |    
T  5287192 tttgcagtgagcgatgaaggtggaaattggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttctgg 5287093  T
Q  670 atgaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacag 769  Q
    ||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||| || |||||  | ||||||||    
T  5287092 atgaagcaacagcatccattgactctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacag 5286993  T
Q  770 aattccaactgtaata 785  Q
    | ||||||||||||||    
T  5286992 agttccaactgtaata 5286977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 572 - 785
Target Start/End: Original strand, 15128616 - 15128829
Alignment:
Q  572 tgcagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagat 671  Q
    ||||||||||||||||||||||||||||||||| || || |||||| | ||||| || |||||||| ||||| || ||||||| |||| | ||| | |||    
T  15128616 tgcagtgagtgatgaaggtggaaattggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttttggat 15128715  T
Q  672 gaagctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaa 771  Q
    |||||||| || |||||||| || ||||||||||| |||||||||||| |||||||||||||||||| ||||||||| || |||||  |||||||||||     
T  15128716 gaagctactgcatccattgattcagccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagag 15128815  T
Q  772 ttccaactgtaata 785  Q
    ||||||||||||||    
T  15128816 ttccaactgtaata 15128829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 5279899 - 5279743
Alignment:
Q  22 gatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaa 121  Q
    ||||| |||||||||||||| |||||||| || ||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  5279899 gatggaattaacatatgctcaatcgggttaaaggatttgagaacaaagctaagcatcattccgcaagaaccaacacttttcaaaggcagcattaggacaa 5279800  T
Q  122 accttgaccctttaggcctatactcagataatgaaatatggaaggtgaatgaactag 178  Q
    | || |||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  5279799 atctggaccctctaggcctgtactcagatgatgaaatatggaaggtgaatgaactag 5279743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 5287605 - 5287453
Alignment:
Q  19 atagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattagga 118  Q
    ||||||||| ||||||||||||| ||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5287605 atagatggggttaacatatgctcaatcggattgaaggatttgagaacaaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattagaa 5287506  T
Q  119 caaaccttgaccctttaggcctatactcagataatgaaatatggaaggtgaat 171  Q
    ||||||| |||||| ||||||| || |||||| ||||||||||||||||||||    
T  5287505 caaacctggaccctctaggcctgtattcagatgatgaaatatggaaggtgaat 5287453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 15128125 - 15128276
Alignment:
Q  22 gatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaa 121  Q
    |||||||| ||||| ||||| || || ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||    
T  15128125 gatgggataaacatttgctcaatgggattgaaggatttgagaatgaagctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaa 15128224  T
Q  122 accttgaccctttaggcctatactcagataatgaaatatggaaggtgaatga 173  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||||||||||    
T  15128225 acctggaccctctaggcctgtactcagatgatgaaatatggaaggtgaatga 15128276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 14946912 - 14946757
Alignment:
Q  22 gatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaa 121  Q
    |||||||| ||||| ||||| || |||||||| ||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||| ||||    
T  14946912 gatgggataaacatttgctcaatggggttgaaggatttgagaatgaggctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaa 14946813  T
Q  122 accttgaccctttaggcctatactcagataatgaaatatggaaggtgaatgaacta 177  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||| || |||||||||    
T  14946812 acctggaccctctaggcctgtactcagatgatgaaatatggaatgtaaatgaacta 14946757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 5309546 - 5309704
Alignment:
Q  17 tcatagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattag 116  Q
    ||||||||||||||||||||||||| ||||| ||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |     
T  5309546 tcatagatgggattaacatatgctcaatcggattgagggatttgagaacgaagctaagcatcattccgcaagaaccaacacttttcaagggaagcatcaa 5309645  T
Q  117 gacaaaccttgaccctttaggcctatactcagataatgaaatatggaaggtgaatgaac 175  Q
    ||||||||| || ||| |||||||  |||||||  ||||||||||||| |||| |||||    
T  5309646 gacaaacctggatcctctaggcctgcactcagacgatgaaatatggaaagtgagtgaac 5309704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 574 - 781
Target Start/End: Complemental strand, 5348146 - 5347939
Alignment:
Q  574 cagtgagtgatgaaggtggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatga 673  Q
    |||||||| ||||||| | |||||||||| | || ||  | ||| ||||||| ||||||||||| || || || || || |||||| ||||| | |||||    
T  5348146 cagtgagtaatgaaggggaaaattggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatga 5348047  T
Q  674 agctacagcctccattgactctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaatt 773  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||| || |||||  | ||||| ||| ||    
T  5348046 agctactgcctctattgattctgccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagtt 5347947  T
Q  774 ccaactgt 781  Q
    ||||||||    
T  5347946 ccaactgt 5347939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 15128381 - 15128477
Alignment:
Q  252 tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtctttggcaacaatctgttgcat 348  Q
    |||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  15128381 tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaaatctttggcaacaatctattgcat 15128477  T

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Target: chr8; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 5279655 - 5279577
Alignment:
Q  252 tttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 330  Q
    |||||||| | ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  5279655 tttaggctgtagagaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt 5279577  T

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Target: chr8; HSP #16
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 5316437 - 5316519
Alignment:
Q  248 tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 330  Q
    |||||||||||| |  | |||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  5316437 tatatttaggctgtaaaaaaatgtcagcttaaggaaacaatcagcaagctaccaagtctcttggactcttctggtaagtcttt 5316519  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 322
Target Start/End: Complemental strand, 14946681 - 14946588
Alignment:
Q  229 tttgattagatttgtttgttatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggt 322  Q
    |||||||| ||||| ||  ||| |||||||| | ||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||    
T  14946681 tttgattatatttgatttgtatgtttaggctgtagagaaatgtcagcttaaggaaacaatctgcaagctaccaagtctcttggactcttctggt 14946588  T

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Target: chr8; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 5309804 - 5309871
Alignment:
Q  263 gagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 330  Q
    ||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  5309804 gagaaatgtcagcttaaggaaacaatcagcaagctatcaagtctcttggactcttctggtaagtcttt 5309871  T

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Target: chr8; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 5287391 - 5287309
Alignment:
Q  248 tatatttaggctttggagaaatgtcacctcaaggaaacaatcagcaggctaccaagtctcttggactcttctggttagtcttt 330  Q
    |||||||||||| | || |||||||| || |||||||||||||||| |||||||| |||||| |||||||||||| |||||||    
T  5287391 tatatttaggctgtagaaaaatgtcagcttaaggaaacaatcagcaagctaccaaatctcttagactcttctggtaagtcttt 5287309  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5348648 - 5348560
Alignment:
Q  19 atagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaaggg 107  Q
    ||||||||  ||||||||||||| || ||  | |||||||| |||||||||||||| ||||| |||||||||||||  |||||||||||    
T  5348648 atagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaaccaattcttttcaaggg 5348560  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 464 - 517
Target Start/End: Complemental strand, 38957375 - 38957321
Alignment:
Q  464 aattaattgaatgtaatcacttgtgtc-gtgtcggacaccaaacacgccttccat 517  Q
    |||||||||||||||||||| |||||| |||||| |||| | |||||||||||||    
T  38957375 aattaattgaatgtaatcacatgtgtcagtgtcgtacactagacacgccttccat 38957321  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 501
Target Start/End: Original strand, 683081 - 683115
Alignment:
Q  467 taattgaatgtaatcacttgtgtcgtgtcggacac 501  Q
    ||||||||||||||||| |||||||||||||||||    
T  683081 taattgaatgtaatcacatgtgtcgtgtcggacac 683115  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 19263021 - 19262983
Alignment:
Q  392 atctatgaagcacaaacacagacaccggacacgacactg 430  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  19263021 atctgtgaagcacgaacacagacaccggacacgacactg 19262983  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 38612960 - 38612911
Alignment:
Q  464 aattaattgaatgtaatcacttgtgtcgtgtcggacaccaaacacgcctt 513  Q
    |||||| |||||||| || | ||||||||||||||||||||||| |||||    
T  38612960 aattaactgaatgtactcgcatgtgtcgtgtcggacaccaaacatgcctt 38612911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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