View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_40 (Length: 403)
Name: NF7739_low_40
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_40 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 9545967 - 9546232
Alignment:
| Q |
25 |
aatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttcagtaacat |
124 |
Q |
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| T |
9545967 |
aatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagcaaattctctaaaacaaattggacattcatgaattttcttttcactaacat |
9546066 |
T |
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| Q |
125 |
tgatannnnnnncaatgttaattttttcatgttgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctctgtg |
224 |
Q |
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| T |
9546067 |
tgatatttttttcaatgttaattttttcatgatgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctctgtg |
9546166 |
T |
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| Q |
225 |
tccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
290 |
Q |
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| T |
9546167 |
tccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
9546232 |
T |
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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 19594 - 19675
Alignment:
| Q |
36 |
atgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttca |
117 |
Q |
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| T |
19594 |
atgtgttcttttgtgtccaccaagtgcttgacccgaattaaatactcgaaaacataccggacattcatgaactttcttttca |
19675 |
T |
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