View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_41 (Length: 395)

Name: NF7739_low_41
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_41
NF7739_low_41
[»] chr6 (1 HSPs)
chr6 (18-385)||(9412207-9412571)
[»] chr1 (2 HSPs)
chr1 (254-313)||(7561332-7561391)
chr1 (252-312)||(7555512-7555572)
[»] chr5 (3 HSPs)
chr5 (28-64)||(32268631-32268667)
chr5 (263-303)||(41886296-41886336)
chr5 (20-56)||(41900426-41900462)
[»] chr4 (5 HSPs)
chr4 (18-53)||(7225096-7225131)
chr4 (261-310)||(554097-554146)
chr4 (265-306)||(566754-566795)
chr4 (260-312)||(642341-642393)
chr4 (257-309)||(1537245-1537297)
[»] chr3 (1 HSPs)
chr3 (261-308)||(51120325-51120372)
[»] chr7 (1 HSPs)
chr7 (266-303)||(10616209-10616246)
[»] chr2 (1 HSPs)
chr2 (259-308)||(45244521-45244570)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 9412207 - 9412571
Alignment:
Q  18 taagtgatgagagtttcaatggaaaacgagagatttgaccgagaagcacattaaaatcaatgcttttgtagcgcttgattttgagagaggtgaggttggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9412207 taagtgatgagagtttcaatggaaaacgagagatttgaccgagaagcacattaaaatcaatgcgtttgtagcgcttgattttgagagaggtgaggttggt 9412306  T
Q  118 gaacctaccgagtatgctaccgagaaaaggacctattccgttgttgtagaccgtaagtgagatgaaaagacggttggtgatggagagaaacaacttggag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9412307 gaacctaccgagtatgctaccgagaaaaggacctattccgttgttgtagaccgtaagtgagatgacaagacggttggtgatggagagaaacaacttggag 9412406  T
Q  218 acaagcgagagagacttcaagtcgcgatagttagcaccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagcatcgg 317  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  9412407 acaagcgagagagacttcaactcgcgatagttagcaccatcgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat---catcgg 9412503  T
Q  318 cagaaacaaccgttgttgtttttcgtcttcttttttgttgatgactgaactgcatagctgtgtctctg 385  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  9412504 caacaacaaccgttgttgtttttcgtcttcttttttgttgatgactgaactgcatggctgtgtttctg 9412571  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 7561332 - 7561391
Alignment:
Q  254 ccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagca 313  Q
    |||||||||||||| ||||||| |  || |||||| ||||||||||||||||||||||||    
T  7561332 ccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatcagca 7561391  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 7555512 - 7555572
Alignment:
Q  252 caccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 312  Q
    |||| |||||||| |||||||||| |  || |||||||||||| |||||||||||| ||||    
T  7555512 caccgttgttgagaaatttgaagacaagttgccaacattcatcgggtaaataaaaagcagc 7555572  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 32268631 - 32268667
Alignment:
Q  28 gagtttcaatggaaaacgagagatttgaccgagaagc 64  Q
    ||||||||||||||||||||||||||||| |||||||    
T  32268631 gagtttcaatggaaaacgagagatttgacagagaagc 32268667  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  263 aggaatttgaagatactttcccaacattcatcaggtaaata 303  Q
    ||||||||||||| || ||||||||| ||||||||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 41900462 - 41900426
Alignment:
Q  20 agtgatgagagtttcaatggaaaacgagagatttgac 56  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  41900462 agtgatgtgagtttcaatggaaaatgagagatttgac 41900426  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 7225131 - 7225096
Alignment:
Q  18 taagtgatgagagtttcaatggaaaacgagagattt 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7225131 taagtgatgtgagtttcaatggaaaacgagagattt 7225096  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 554097 - 554146
Alignment:
Q  261 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatca 310  Q
    ||||||||||||||| |  |||||||||||||||||| || |||||||||    
T  554097 tgaggaatttgaagacaaattcccaacattcatcaggaaagtaaaaatca 554146  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 566754 - 566795
Alignment:
Q  265 gaatttgaagatactttcccaacattcatcaggtaaataaaa 306  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  566754 gaatttgaagacacgttcccaacagtcatcaggtaaataaaa 566795  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 642341 - 642393
Alignment:
Q  260 ttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 312  Q
    ||||| || |||||||| |  |||||||||||||||||||||||||| |||||    
T  642341 ttgagaaaattgaagatgcactcccaacattcatcaggtaaataaaactcagc 642393  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 1537297 - 1537245
Alignment:
Q  257 ttgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatc 309  Q
    |||||||||||| |||| | || ||||||||| |||||||||||||| |||||    
T  1537297 ttgttgaggaatctgaatacacattcccaacactcatcaggtaaatataaatc 1537245  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 51120372 - 51120325
Alignment:
Q  261 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 308  Q
    ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 51120325  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  266 aatttgaagatactttcccaacattcatcaggtaaata 303  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 45244570 - 45244521
Alignment:
Q  259 gttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 308  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||    
T  45244570 gttgaggaatttcaagacacattcccaacactcatcaggtaaatagaaat 45244521  T

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