View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_43 (Length: 384)
Name: NF7739_low_43
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 30516532 - 30516873
Alignment:
| Q |
10 |
tcaaatttaatgctattgtttctagattaatctatgtgaggtgagagatttcttgctctctaatttgttattatgtcaaaacttttttaggttagtggta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30516532 |
tcaaatttaatgctattgtttctagattaatctatgtgaggtgagagatttcttgctctctaatttgttattatgtcaaaacttttttaggttagtggta |
30516631 |
T |
|
| Q |
110 |
catctatagtgtagaagttgtttaagtgatgttttagttagtatatatgcatgcttgtctcatttctactttgaatcttgttcccttttcttcaattgaa |
209 |
Q |
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| T |
30516632 |
catctatagtgtagaagttgtttaagtgaggttttagttagtatat----atgcttgtctcatttctactttgaatcttgttcccttttcttcaattgaa |
30516727 |
T |
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| Q |
210 |
tttgatttagaattcataagttatagtacatgtgatgtggtccnnnnnnnctagttggtatactgaatggttgaaagtcctaacttacctagatggaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30516728 |
tttgatttagaattcataagttatagtacatgtgatgtggtccaaaaaaactagtcggtatactgaatggttgaaagtcctaacttacctagatggaact |
30516827 |
T |
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| Q |
310 |
ctttttcaatgtgtttggtttcaatgtggaaagtattaacaatgac |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30516828 |
ctttttcaatgtgtttggtttcaatgtggaaagtattaacaatgac |
30516873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 30556872 - 30557213
Alignment:
| Q |
10 |
tcaaatttaatgctattgtttctagattaatctatgtgaggtgagagatttcttgctctctaatttgttattatgtcaaaacttttttaggttagtggta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30556872 |
tcaaatttaatgctattgtttctagattaatctatgtgaggtgagagatttcttgctctctaatttgttattatgtcaaaacttttttaggttagtggta |
30556971 |
T |
|
| Q |
110 |
catctatagtgtagaagttgtttaagtgatgttttagttagtatatatgcatgcttgtctcatttctactttgaatcttgttcccttttcttcaattgaa |
209 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30556972 |
catctatagtgtagaagttgtttaagtgaggttttagttagtatat----atgcttgtctcatttctactttgaatcttgttcccttttcttcaattgaa |
30557067 |
T |
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| Q |
210 |
tttgatttagaattcataagttatagtacatgtgatgtggtccnnnnnnnctagttggtatactgaatggttgaaagtcctaacttacctagatggaact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30557068 |
tttgatttagaattcataagttatagtacatgtgatgtggtccaaaaaaactagtcggtatactgaatggttgaaagtcctaacttacctagatggaact |
30557167 |
T |
|
| Q |
310 |
ctttttcaatgtgtttggtttcaatgtggaaagtattaacaatgac |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30557168 |
ctttttcaatgtgtttggtttcaatgtggaaagtattaacaatgac |
30557213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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