View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_45 (Length: 380)
Name: NF7739_low_45
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_45 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 377
Target Start/End: Original strand, 35991555 - 35991930
Alignment:
| Q |
3 |
ccatatgtgtatatataatattttttggtgatgtgatgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattcc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35991555 |
ccatatgtgtatatataatattttttggtgatgtgattataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattcc |
35991654 |
T |
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| Q |
103 |
aagtacatcctacgttgagcaactagtaattcttacaaataaagtggaattcatcttgtgcctttggtatccctcttactgctttcacttttagtacttt |
202 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35991655 |
aagcacatcctacgttgagcaactagtaattcttacaaataaagtgg--tccatcttgtgcctttggtatccctcttaccgctttcacttttagtacttt |
35991752 |
T |
|
| Q |
203 |
tatatatatttactttgagaatccttgcaactttctacaaaatggtttgtaacaaaagtaaattccattcatatggaaggcataattcttttccattcct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35991753 |
tatatatatttactttgagaatccttgcaactttctacaaaagggtttataacaaaagtaaattccattcatatggaaggcataattcttttccattcct |
35991852 |
T |
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| Q |
303 |
tttctagtttcctctgtttgatctcatgcatgcaagaatatgctggtgga---tactagtgttttcttcatttcagtc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
35991853 |
tttctagtttcctctgtttgatctcatgcatgcaagaatatgctggtggatactactagtgtcttctccatttcagtc |
35991930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 256 - 377
Target Start/End: Original strand, 35995321 - 35995442
Alignment:
| Q |
256 |
aaaagtaaattccattcatatggaaggcataattcttttccattccttttctagtttcctctgtttgatctcatgcatgcaagaatatgctggtggatac |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35995321 |
aaaagtaaattccattcatatggaaggcataattcttttccattcctcttctagtttcctctgtttgatctcatgcatgcaagaatatgctggtggatac |
35995420 |
T |
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| Q |
356 |
tagtgttttcttcatttcagtc |
377 |
Q |
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|||||| |||| |||||||||| |
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| T |
35995421 |
tagtgtcttctccatttcagtc |
35995442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 35980799 - 35980933
Alignment:
| Q |
6 |
tatgtgtatatataatattttttggtgatgtgat-gataactaaaaacttacacagacatgcatgca-cacatatg-cataataagccaagggatattcc |
102 |
Q |
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||||||||| |||| ||||| ||||||||||||| ||||| ||||||| ||||||||||||||| || || |||| |||||||| ||||||||| |
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| T |
35980799 |
tatgtgtatttatagtatttgttggtgatgtgattgataaataaaaac----acagacatgcatgcagcaactagcacatattaagccaaaggatattcc |
35980894 |
T |
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| Q |
103 |
aagtacatcctacgttgagcaactagtaattcttacaaa |
141 |
Q |
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| T |
35980895 |
aagtacatcctatgttgagcaactagtaattcttacaaa |
35980933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 35980991 - 35981071
Alignment:
| Q |
234 |
tttctaca-aaatggtttgtaacaaaagtaaattccattcatatggaaggcataattcttttccattccttttctagtttc |
313 |
Q |
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|||||||| ||||||||||| |||||| ||||||| ||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
35980991 |
tttctacataaatggtttgtggaaaaagttaattccactcacatggaaggcataattcttttccgttcctcttctagtttc |
35981071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 12325365 - 12325434
Alignment:
| Q |
12 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgca |
81 |
Q |
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| T |
12325365 |
tatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacacatatgca |
12325434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 47543 - 47625
Alignment:
| Q |
12 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagg |
94 |
Q |
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|||| ||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||||||||||||| || |||| |||| |
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| T |
47543 |
tatagataatattttttgataatatggatgataactaacaacttacatagaca-gcatgcacacatatgcagaagaagctaagg |
47625 |
T |
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