View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_47 (Length: 369)
Name: NF7739_low_47
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 2700082 - 2700437
Alignment:
| Q |
1 |
tccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcacact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700082 |
tccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcacaca |
2700181 |
T |
|
| Q |
101 |
gattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcactga |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700182 |
cattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcactga |
2700281 |
T |
|
| Q |
201 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700282 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
2700381 |
T |
|
| Q |
301 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2700382 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttct |
2700437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 2692389 - 2692736
Alignment:
| Q |
7 |
agttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcacactgattat |
106 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| | ||||||| ||||| |
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|
| T |
2692389 |
agttcaaacccttgtaagcaactacaaatagccgaacccaacactgacaattcacaagcagcaaaactaccacaatagttatataattcacactcattat |
2692488 |
T |
|
| Q |
107 |
gaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcactgaactatt |
206 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||| ||| | |
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|
| T |
2692489 |
ggggccctttttgtatctcaatccaacgtttctcattttcgttccatacaagctctctttcataaccatcccaaccaatctgaaacctcactaaac---t |
2692585 |
T |
|
| Q |
207 |
atcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtcatatca |
306 |
Q |
| |
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| ||||| |||| |||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
2692586 |
accattcaacttccactcattatcattataaacaaaatacctatctccattattatcataattaagtacaaaaccatgaagaaaactgcctgtcatatca |
2692685 |
T |
|
| Q |
307 |
acaccagtaaaaattctaccatcccaataaccacttctccatgttcttctc |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| || ||||| |
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|
| T |
2692686 |
acaccagtaaaaattctaccatcccagtaaccacttctccatatttttctc |
2692736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 14521457 - 14521813
Alignment:
| Q |
1 |
tccttcagttcaaacccttttaagcaattacaaatagccgaacccgaaaccgacaattcacaagctgcaaaatcaccacaatagttataaacctcacact |
100 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||||||||| |||||||| | ||| ||||||| ||||||||| |||||||||||||||| ||||||| |
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|
| T |
14521457 |
tcctttagttcaaacccttgtaagcaactacaaatagcccaacccgaatctgacgtatcacaagatgcaaaatcgccacaatagttataaaattcacact |
14521556 |
T |
|
| Q |
101 |
gattatgaggccctttttgtatctcagtccaacgtttctcattttctttccatagaaactctctttcaataccatcccaaccaatctgaaacctcactga |
200 |
Q |
| |
|
||||||||||||| ||||| || || ||||| ||||||| |||| ||||||| || |||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
14521557 |
gattatgaggccccttttgattcacactccaatatttctcagtttcattccatataagctctctttcataaccatcccaaccaatctgaaacctaactga |
14521656 |
T |
|
| Q |
201 |
actattatcattctccttcaactcgttatcattataaacaaaagacctatctccattactatcataattaagtataaaaccatgaagaaaactacctgtc |
300 |
Q |
| |
|
||||||| ||||| |||| |||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
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|
| T |
14521657 |
actattaccattcaacttccactcattatcattataaacaaaatatctatctccattactatcataatttagtataaaaccatgaagaaaactacttttc |
14521756 |
T |
|
| Q |
301 |
atatcaacaccagtaaaaattctaccatcccaataaccacttctccatgttcttctc |
357 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||| || ||||| |
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|
| T |
14521757 |
gcatcaacaccggtaaaaaccctaccatcccaataaccacttctccatttttttctc |
14521813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 36288777 - 36288737
Alignment:
| Q |
307 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
347 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
36288777 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
36288737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 12096797 - 12096837
Alignment:
| Q |
307 |
acaccagtaaaaattctaccatcccaataaccacttctcca |
347 |
Q |
| |
|
||||| || |||| ||||||||||||||||||||||||||| |
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|
| T |
12096797 |
acacctgtgaaaactctaccatcccaataaccacttctcca |
12096837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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