View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_48 (Length: 365)
Name: NF7739_low_48
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 2926365 - 2926158
Alignment:
| Q |
9 |
tggtgttgggaacaggatgggcggcaacaagttttatgaagaatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcatt |
108 |
Q |
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| T |
2926365 |
tggtgctgggaacaggatgggcggcaacaagttttatgaagaatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcatt |
2926266 |
T |
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| Q |
109 |
cactcctttgcttcctagcgtcacttgcggcaccgttgaagcgcgtagcattgttgaacctgttcgcaatatttttaggaaggtaataaaatgtttaatt |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926265 |
cactcctttgcttcctagcgtcacttgcggcactgttgaagcgcgtagcattgttgaacctgttcgcaatatttttaggaaggtaataaaatgtttaatt |
2926166 |
T |
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| Q |
209 |
gctgagaa |
216 |
Q |
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|||||||| |
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| T |
2926165 |
gctgagaa |
2926158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 2926103 - 2926028
Alignment:
| Q |
271 |
aaaacttatactgtatacagctgtgatcagtgttcacatacacaggagatgcatgtatacaaatattttacatgtac |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2926103 |
aaaacttatactgtatacagctgtgatcagtgttcacatacaca-cagatgcatgtatacaaatattttacatgtac |
2926028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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