View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7739_low_51 (Length: 341)
Name: NF7739_low_51
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 48824693 - 48824968
Alignment:
| Q |
51 |
tattttaatactgacctactaccaagagcaaatataccacatttcctgatcattccaccatctaatgacaatgctccatcagtaatgcatgggagagcaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824693 |
tattttaatactgacctactaccaagagcaaagataccacatttcctgatcattccaccatctaatgacaatgctccatcagtaatgcatgggagagcaa |
48824792 |
T |
|
| Q |
151 |
gcatcattgcattccgggttttaaatatttgtagacgagaaaaaaggctatagaagagcgtctctctaagaccatgcccactggcagtaagaaaagacaa |
250 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48824793 |
gcatcatttcgttccgggttttatatatttgtagacgagaaaaaaggctatagaagagcgtctctctaagaccatgcccactggcagtaagaaaagacaa |
48824892 |
T |
|
| Q |
251 |
tctatttgaatccaaatggatcatgttcacagcataatcaagaaacccgggtgggcactccccattaggcaatctc |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48824893 |
tctatttgaatccaaatggatcatgttcacagcataatcaagaaacccgggcgggcactccccattaggcaatctc |
48824968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University