View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_52 (Length: 339)
Name: NF7739_low_52
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 38720692 - 38720418
Alignment:
| Q |
16 |
cagtgaaaccctcagctggttacagtcattgggctgagaaaaataggtttcaagtaaacgatacactttgtaagtccaaaccctatttttattannnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38720692 |
cagtgaaaccctcagctggttacagtcattgggctgagaaaaataggtttcaagtaaacgatacactttgtaagtccaaaccctatttttattatttttt |
38720593 |
T |
|
| Q |
116 |
naatctctgaattttgaacactttgatatacatcatgatatatatttgtctgttgagttttttctatgaaacaaccaaactttgtctataatcatatttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38720592 |
taatctctgaattttgaacactttgatatacatcatgatatatatttgtctgttgagttttttctatgaaacaaccaaactttgtctataatcatatttt |
38720493 |
T |
|
| Q |
216 |
gtacaaaaatataatcaagttttgggttaaatatatttataattgttacaatcctcttcaatcttattatcatca |
290 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38720492 |
gtacaaaaatataatcacgttttgggttaaatatatttataattgttacaatcctcttaaatcttattatcatca |
38720418 |
T |
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