View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_54 (Length: 328)
Name: NF7739_low_54
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 41572416 - 41572717
Alignment:
| Q |
10 |
cgtgttctagcctgatatgatagaattttagccgaattatgcatgagagtgactcgggactgctcaccccgaccgatccgtaaaatcaactgagataatt |
109 |
Q |
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| T |
41572416 |
cgtgctctagcttgatatgatagaattttagccggattatgcatgagagtgactcgggactgctcaccccgaccgattcgtaaaatcaactcagataatt |
41572515 |
T |
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| Q |
110 |
tgtatgatgcacactaaccttataagaaaaactaaatatgacttgactggtcaatcccagactatttacagactgttagttatcatagtttcccccaaga |
209 |
Q |
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| T |
41572516 |
tgtatgatgcacgctaacattataagaaaaactgaatatgacttgactggtcaatcccatactatttacagactgttagttatcatagtttcccccaaga |
41572615 |
T |
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| Q |
210 |
tcactatcacccaaggataggtgaaactcaatgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttgcgcatgagaagggt |
309 |
Q |
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| T |
41572616 |
tcactatcacccaaggataggtggaactcactgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttgcgcatgagaagggt |
41572715 |
T |
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| Q |
310 |
aa |
311 |
Q |
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| T |
41572716 |
aa |
41572717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 2934781 - 2934696
Alignment:
| Q |
200 |
tcccccaagatcactatcacccaaggataggtgaaactcaatgataccttatgtctcatcccaatccatttattttcttttcagata |
286 |
Q |
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| T |
2934781 |
tccccccatatcactatcaccttaggataagtggaactcactgagacattatgtctcgtcccaatcccttt-ctttcttttcagata |
2934696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 7451272 - 7451172
Alignment:
| Q |
209 |
atcactatcacccaaggataggtgaaactcaatgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttgcgcatgagaaggg |
308 |
Q |
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|||| |||||||| |||||||||| |||| | ||| ||||||||||||| |||||||| ||| |||||||||||||| ||||||| | ||||||||| |
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| T |
7451272 |
atcattatcaccctaggataggtggaacttactgagaccttatgtctcaccccaatcctttttatttcttttcagatacgtaggttgctcgtgagaaggg |
7451173 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
7451172 |
t |
7451172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 5548597 - 5548649
Alignment:
| Q |
223 |
aggataggtgaaactcaatgataccttatgtctcatcccaatccatttatttt |
275 |
Q |
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| T |
5548597 |
aggataggtggaactcactgagaccttatggctcatctcaatccatttatttt |
5548649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 18010958 - 18010886
Alignment:
| Q |
223 |
aggataggtgaaactcaatgataccttatgtctcatcccaatccatttattttcttttcagataaacaggttgc |
296 |
Q |
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|||||||||| |||||| ||| || | ||||||| |||||||| ||||||| | ||||||||||||||||||| |
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| T |
18010958 |
aggataggtggaactcactgagacatcctgtctcaccccaatccctttattt-catttcagataaacaggttgc |
18010886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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