View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7739_low_55 (Length: 328)
Name: NF7739_low_55
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7739_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 33707371 - 33707688
Alignment:
| Q |
1 |
gcctgctaaatagatctaaagaagtctcaaggttttgtgtacatttaagaattaagactaaattttcttacatgtagataaaaatacagatagaggtaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33707371 |
gcctgctaaatagatctaaagaagtctcaaggttttgtgtacatttaagaattaagactaaattttcttacatgtagataaaaatacagatagaggtaac |
33707470 |
T |
|
| Q |
101 |
atgccataaaagttagataatttttgtgatgaggtattataagcattgtgttcttattgatggatcttcaatgagattagagagctttttacatactaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
33707471 |
atgccataaaagttagataatttttgtgatgaggtattataagcattgtgttcttattgatggatcttcaatgagattagagagctttttacatattact |
33707570 |
T |
|
| Q |
201 |
tatgcagaagattgttctatatctaatgaatgtcacagctaactgtttccttatgtttcagtctgcatcaagtttnnnnnnngatgagaacagacgccga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33707571 |
tatgcagaagattgttctatatctaatgaatgtcacagctaactgtttccttatgtttcagtctgcatcaagtttaaaaaaagatgagaacagacgccga |
33707670 |
T |
|
| Q |
301 |
agtaatcttgagtctctg |
318 |
Q |
| |
|
||||||||||| |||||| |
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| T |
33707671 |
agtaatcttgaatctctg |
33707688 |
T |
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