View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7739_low_6 (Length: 730)

Name: NF7739_low_6
Description: NF7739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7739_low_6
NF7739_low_6
[»] chr1 (6 HSPs)
chr1 (10-401)||(15884903-15885294)
chr1 (10-395)||(12610760-12611145)
chr1 (10-401)||(12637754-12638145)
chr1 (427-560)||(15885317-15885450)
chr1 (439-532)||(12637632-12637725)
chr1 (431-539)||(12610619-12610727)
[»] scaffold0059 (1 HSPs)
scaffold0059 (10-394)||(62894-63278)
[»] scaffold0554 (1 HSPs)
scaffold0554 (241-385)||(5626-5770)
[»] chr3 (4 HSPs)
chr3 (242-403)||(23146647-23146811)
chr3 (269-403)||(23039772-23039909)
chr3 (269-403)||(23036895-23037032)
chr3 (241-325)||(23033659-23033743)
[»] chr6 (1 HSPs)
chr6 (269-387)||(21780681-21780799)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 15884903 - 15885294
Alignment:
Q  10 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 109  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  15884903 cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt 15885002  T
Q  110 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 209  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  15885003 cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaaga 15885102  T
Q  210 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 309  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  15885103 agagttcgcgtctttggggaagggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttg 15885202  T
Q  310 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 401  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||| |||||    
T  15885203 aggcctaaacttgagaggttgcatagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaaga 15885294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 12611145 - 12610760
Alignment:
Q  10 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 109  Q
    |||| |||||||||||||||||||||  ||||||| ||||| ||||| ||  | |||||||||||||||| ||||| ||||||| | ||||  |||| ||    
T  12611145 cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt 12611046  T
Q  110 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 209  Q
    |  | ||||| ||  || ||||  | ||| | ||||||||||||||||| ||| ||||| || | |||||||||||||| | |||| |||||| |  |||    
T  12611045 cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga 12610946  T
Q  210 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 309  Q
    |||||| |  |   | ||  | ||||||||||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| ||||||    
T  12610945 agagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccggtttg 12610846  T
Q  310 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagc 395  Q
    ||||||||||| |||||||||||||| | ||||||||| ||||| ||||| ||  ||| |||||||||||||||||||||||||||    
T  12610845 aggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagc 12610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 12638145 - 12637754
Alignment:
Q  10 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 109  Q
    |||| |||||||||||| || ||| |  | ||||||||||| |||||||||  ||| ||||||||||||| | | ||||||||||||||||| |||| ||    
T  12638145 cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt 12638046  T
Q  110 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 209  Q
    |  | ||||| ||| |||||||| ||||| ||   |||||| ||||||   |  ||||   | | | |||||||||||||||||||||||||| ||||||    
T  12638045 cacaacaaggatcacccatcaacatcactcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaaga 12637946  T
Q  210 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 309  Q
    | || |||  | |||||  || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||     
T  12637945 acagctcgtatcgttggcaaatggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttc 12637846  T
Q  310 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaagccaaaga 401  Q
    ||| ||||| |||||   |||||||||| |||||||| |||| | | ||| ||||||| ||||||||||||||| ||||||||||| |||||    
T  12637845 aggtctaaaattgaggtattgcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaaga 12637754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 427 - 560
Target Start/End: Original strand, 15885317 - 15885450
Alignment:
Q  427 gatttggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagta 526  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |    
T  15885317 gatttggttgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaagga 15885416  T
Q  527 taataaaacccttcaagtataatttagatgaatg 560  Q
    ||||||| ||||| ||||||||||||||||||||    
T  15885417 taataaaccccttgaagtataatttagatgaatg 15885450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 439 - 532
Target Start/End: Complemental strand, 12637725 - 12637632
Alignment:
Q  439 gttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataataa 532  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  12637725 gttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa 12637632  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 431 - 539
Target Start/End: Complemental strand, 12610727 - 12610619
Alignment:
Q  431 tggttgacgttcttctaaaattccaaggtggaaatgataatgacaaagatatatgcttaactgacaacaacatcaaggctgtaatcctggtaagtataat 530  Q
    |||| |||||||||||||||||||||||||| ||||| |   || |||||||||| |||||||| ||||| |||||| || ||||||||||||| |||||    
T  12610727 tggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataat 12610628  T
Q  531 aaaaccctt 539  Q
    ||| |||||    
T  12610627 aaacccctt 12610619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 63278 - 62894
Alignment:
Q  10 cgaagaatatgcacaatggagcttttatcacaaaaacgtgtgagttcattcaagccaataagagaagaagtgcttaccaatctcatcaaaagaattggtt 109  Q
    |||| |||||||||||| ||||||||  | ||||  ||| | | |||||||  ||||||||||||||||| |||  |||||||||||||||| |||| ||    
T  63278 cgaaaaatatgcacaattgagcttttgactcaaagtcgtatcaattcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatt 63179  T
Q  110 ccaagcaaggttcatccatcaacctcactgaacttgtagtttcatcaacgtttgctatcctttcgaaggctgcgtttggaaacaaatgcaaagaccaaga 209  Q
       | ||||| |   |  ||||| |||||||||||||| || || ||| | || ||||| |||| | ||||||||||||  |||||||||||| ||||||    
T  63178 tgcaacaaggattgcctgtcaacatcactgaacttgtacttacaacaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaaga 63079  T
Q  210 agagttcgcgtggttggggaagggagaatcaattgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttg 309  Q
    | |||| ||||  ||||| ||   || |||||||| |||||||||||| ||   |||| | ||||||||||| ||||||||||||||| | | |  |       
T  63078 acagtttgcgtcattgggaaatataggatcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaa 62979  T
Q  310 aggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcattgaacataaagaagcaaagtcaaaag 394  Q
    |||||||||||| ||||||||||||||| | ||||||| ||||| ||||| ||| ||||| |||||||||||||||||| |||||    
T  62978 aggcctaaacttaagaggttgcatagacaacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaag 62894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 241 - 385
Target Start/End: Original strand, 5626 - 5770
Alignment:
Q  241 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaa 340  Q
    |||||||||||||||||| | || ||  ||||||| || ||||||||||| ||||  ||| |||||||||||||||| ||||||| | | ||| ||| ||    
T  5626 attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa 5725  T
Q  341 ttgatcatatactggaaaatatcatcattgaacataaagaagcaa 385  Q
     |||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  5726 ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa 5770  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 242 - 403
Target Start/End: Complemental strand, 23146811 - 23146647
Alignment:
Q  242 ttgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaat 341  Q
    ||||||| ||||||||| | || ||  ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| ||     
T  23146811 ttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaac 23146712  T
Q  342 tgatcatatactggaaaatatcatcattgaacataaagaagcaaagt---caaaagccaaagatg 403  Q
    |||||| ||| | ||||| ||||||| ||| |||||||| | |||||   |||||||||||||||    
T  23146711 tgatcagatatttgaaaacatcatcaatgagcataaagaggaaaagtacacaaaagccaaagatg 23146647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 269 - 403
Target Start/End: Complemental strand, 23039909 - 23039772
Alignment:
Q  269 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 368  Q
    ||||||| |||||||||||| | || |||||| ||||| |||||||||| ||||||||||| ||| ||| || |||||| ||| | ||||| |||||||     
T  23039909 tgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaa 23039810  T
Q  369 tgaacataaagaagcaaagt---caaaagccaaagatg 403  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23039809 tgagcataaagaggaaaagtacacaaaagccaaagatg 23039772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 403
Target Start/End: Complemental strand, 23037032 - 23036895
Alignment:
Q  269 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 368  Q
    ||||||| |||||||||||||| || | | || |||||||||||||||| || |||||| | ||| ||| || |||||| ||| | ||||| |||||||     
T  23037032 tgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaa 23036933  T
Q  369 tgaacataaagaagcaaagt---caaaagccaaagatg 403  Q
    ||| |||||||| | |||||   |||||||||||||||    
T  23036932 tgagcataaagaggaaaagtacacaaaagccaaagatg 23036895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 23033743 - 23033659
Alignment:
Q  241 attgcaggaggttttgacattggtgaactgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgaga 325  Q
    ||||||||||||||| || | || ||  ||||||||||  ||||||||||||||| |||| ||||| | |||||||| |||||||    
T  23033743 attgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgaga 23033659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 21780799 - 21780681
Alignment:
Q  269 tgtttccttcagctaaatggcttcaacttgtttctggtttgaggcctaaacttgagaggttgcatagacgaattgatcatatactggaaaatatcatcat 368  Q
    ||||||||||  |||||||| || ||| |||| |||| ||||||||||| |||||||| || ||  ||| || |||||| ||| | ||||| |||||||     
T  21780799 tgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaa 21780700  T
Q  369 tgaacataaagaagcaaag 387  Q
     || |||||||| ||||||    
T  21780699 ggaccataaagaggcaaag 21780681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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